General information for g673.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g673 is located on chr_3: 5207909..5209193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g673 | g673.t5 | isoform | g673.t5 | 5204140 | 5208765 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon1 | 5204140 | 5205208 |
| chr_3 | g673 | g673.t5 | TTS | g673.t5 | 5204153 | 5204153 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon2 | 5205268 | 5205458 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon3 | 5205522 | 5205661 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon4 | 5207376 | 5207590 |
| chr_3 | g673 | g673.t5 | cds | g673.t5.CDS1 | 5207456 | 5207590 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon5 | 5207673 | 5207832 |
| chr_3 | g673 | g673.t5 | cds | g673.t5.CDS2 | 5207673 | 5207832 |
| chr_3 | g673 | g673.t5 | exon | g673.t5.exon6 | 5207900 | 5208765 |
| chr_3 | g673 | g673.t5 | cds | g673.t5.CDS3 | 5207900 | 5208765 |
| chr_3 | g673 | g673.t5 | TSS | g673.t5 | 5209122 | 5209122 |
Sequences
>g673.t5 Gene=g673 Length=2641
ATGTTAGTCAACAGAATTCATAAGCCATATCTTTGTAATATATGTAAAAAAGCGACGGGT
GTGAAGGCATGTAAATGTCAGAAAGCATTCTACTGTTCGCGTAATTGCCAAAAAATTGAT
TGGAATGTACACAAGAGCGATTGTCTTTATAAATTCACAGATCCTCGTGCAATCACAACA
AAGAAAACGAACAACAGTACAGACCCAAATAATACTTCACATGATATATTGCTGCAAGAA
CAACAACAACAACGATTCACAAATTCGGATAACGCAACACTAATGCAACAGACTGAACAA
CAACACGAACGTACGATTACATTAGACAGAGAGAGACGGACATATGATCCAACACCACTA
CAATATCAACAACCGCATGTCACTTATACACCTAACACATTTACGACAACATCAACACAT
ATACAACATAGCACATCGACATCGAATGAGGCAGTAGATGATTTTGAAGAAAATTTGTTC
AATTCATTGATGTATTCAGTCGTGAACGAAAGTACTGAGCAAGAAATACTGAAAAATTTA
AACATACGTGCAGACGATTTACTTACAACATATTCACTGGATAGCGATATTTCTTCATCA
TTAAACGATACTCAATCATTGAAAGAGTACGTGCCAAATTTAAATTCAGTCGATCAAACG
CTAAGCGACAAAATTTTCAATCAAGAAGCCTTCGAAATTAGACCTGAAACGCAAAAATTA
TTAGCTGAAACAAAAGAAACACTAGAAAAAGAATTGTCATTGTTTTGTGAGAATAATCTG
AATGAGAAGGATCAAATGATGCAGTTAGGCACAACAAATCCAAAATATGTTACCCACACG
AAAGTTCAAGATAATAATGTTATGAGAACTCCGGATGAACAGATGGCTTTGGAAGAAATG
AGTTGTACTTTAATTCGAGACTTGAATGAATACGGAGTTTGCGTGCTTGACAGTTTTGTC
GGTGAAGAGCGTGGACTTAAAGTCCTGGAAGAGGTCAAATGCATGTATAAAGCGGGATTA
TTCAGAGATGGACAACTTGTGTCAACAACAAAATCAAAATTAGATCATAAGCATATTAGA
AGTGATAAAATAATGTGGGTCGATGGAAAAGAACAAGGCCTTTATAATATCAAATATCTG
ATGAATCAGGTAAAACAGTAGACAAAATGTTGACATTATGCTTTAATAATGCACATACTA
ATTTTATGTGAAAAAAAAATTGCACTTGGAATCAATCCAAAGCAATGGTTGCGGTCTATG
AAGGAAAAGGATCACATTATGTGAAACATGTGGACAATCCAAATAAAGATGGTCGTTGCA
TTACCTGCATATATTATTTAAATGTCAACTGGAATGTGCAAGAGAGTGGCGGTTTGTTGA
GAATTTTTCCCGATGGTTGGGTGGATCGAATTGCTGACATTGAGCCAATTTTCGATCGAA
TAACCTTTTTCTGGAGTGACAGACGAAATCCTCATGAAGTACAACCTGCACATAGAACAA
GATATGCCATAACACTTTGGTATTTTGACGCACATGAACGTGAAGCGGCTGTTAGAAAAT
ACAAAAAAGACTGTGAAAACCTGTTGAAAGCAGCTTGAAAATTGTCTTACTTAAAATCTC
ATCAAATTACAAAATTTTAATTTTAGCCATAGTCATACAAAGATTGTGCAAAGTTCACTT
TTTTATACAAACAAAACATTGCACTTTATTTTTTTATTTTTGTAAAAAAAGGTGTTGAGA
TGAATTTATTTTTTTGTGCATTAAACTCGAATGTGAATTTTAACCCCGTGCGCAAGACAA
AGTGAAAAATTTTATCACACAAAAAGAAATTATCAAAAAAAAATGAATCAAAAAAAAGTA
TTTAATCCGCTGCGATAAAAGAAGTGAAATTTGCTCGTAAATTGTTGTGAAATAAAATCA
GTAAAAAAATAAACATGTGAGGAATGTGACATTTATTTGAGATTTGCTAAAAATGCTAAC
TTTCATAGATGAATGTGAAAATTTTTAAATAGCGACATAATGTCAATTCTAATAATTATT
TAGACAACAATCTTAAAGTTTACTAACATCACATCATTGTGCAAATAAAATTTGGCATGT
GCAAACATAAAAAAGAATTTTTAAGATAATTTTATTCAAATGGTGCAATTTACATGTTAA
TGACTATCTAAATATAAAAAACTAAAACATTGAGATTCTATTATGAAATAAATTCCATAA
ATTTAGTATTCAGTTCGAATACCATGAAAGAAAAAAAAAATCTTAAAAATTTTCTTTGTG
TTGCCACAGCACTCGTGGCGATTTTTTCGACTATTTTTGCCATGCCTTCAATCTATTTGC
CTTGAAATATCCACGTACGCGGTATAAAATAATTCTTCTCTAATTGATAAAATCAACAAA
TGTAAATAAGTAGGAAATGTCTTCTGATAATGAATAAAATTTAAGAAAAATGTAAAAATA
ACTACTTGTTATGAATGATGTCATTAATTAAAATATAATTTGTTTCTATACACTTATAAA
TATATTTTGAGGATTATTAAATATTAATAATGAAAAGAGTCTGAAAAGTCATCTGGATGA
AAGTTTTTATTAAAAAATAAATTGATGTTTTTGGAATCAATAAGAAGGAAAAAAACTTGT
T
>g673.t5 Gene=g673 Length=386
MLVNRIHKPYLCNICKKATGVKACKCQKAFYCSRNCQKIDWNVHKSDCLYKFTDPRAITT
KKTNNSTDPNNTSHDILLQEQQQQRFTNSDNATLMQQTEQQHERTITLDRERRTYDPTPL
QYQQPHVTYTPNTFTTTSTHIQHSTSTSNEAVDDFEENLFNSLMYSVVNESTEQEILKNL
NIRADDLLTTYSLDSDISSSLNDTQSLKEYVPNLNSVDQTLSDKIFNQEAFEIRPETQKL
LAETKETLEKELSLFCENNLNEKDQMMQLGTTNPKYVTHTKVQDNNVMRTPDEQMALEEM
SCTLIRDLNEYGVCVLDSFVGEERGLKVLEEVKCMYKAGLFRDGQLVSTTKSKLDHKHIR
SDKIMWVDGKEQGLYNIKYLMNQVKQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g673.t5 | Gene3D | G3DSA:3.30.60.180 | - | 3 | 49 | 1.3E-8 |
| 6 | g673.t5 | Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 289 | 386 | 2.4E-17 |
| 2 | g673.t5 | PANTHER | PTHR12907 | EGL NINE HOMOLOG-RELATED | 9 | 385 | 1.0E-30 |
| 1 | g673.t5 | Pfam | PF01753 | MYND finger | 12 | 48 | 2.5E-8 |
| 7 | g673.t5 | ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 12 | 48 | 11.127 |
| 3 | g673.t5 | SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 6 | 50 | 2.44E-8 |
| 4 | g673.t5 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
