General information for g673.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g673 is located on chr_3: 5207909..5209193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g673 | g673.t7 | TTS | g673.t7 | 5207120 | 5207120 |
| chr_3 | g673 | g673.t7 | isoform | g673.t7 | 5207909 | 5209193 |
| chr_3 | g673 | g673.t7 | exon | g673.t7.exon1 | 5207909 | 5208797 |
| chr_3 | g673 | g673.t7 | cds | g673.t7.CDS1 | 5207911 | 5208765 |
| chr_3 | g673 | g673.t7 | exon | g673.t7.exon2 | 5208895 | 5209193 |
| chr_3 | g673 | g673.t7 | TSS | g673.t7 | NA | NA |
Sequences
>g673.t7 Gene=g673 Length=1188
AATATGTCGACATTTGAAATGTTCATGATAAAATAAGGTTCTTCTTATTTCTACACACAA
AAAACCAGATTGTTTTCATTTTTTACGATTTTTCAAAAGTAAGTCACAAAAAAAAGTTTT
TCATACAGTGAAAAAATGAGTAAAACGCTCTTAATTCTTTAATTAGTGGTGAAAACTTTG
CTATTCCATTATCAATAAGCATTGCTGCACCACTGTTTAGTTTTTGTCTTCTTTACACAG
ATCGTGGTGGAAATTTTTCTAAGAAGTTTTTTCAATACGTGACTTTTTGTGATTTCAAGA
GTAGCAGCTAGTCAAACAAAAAGAAACAAAAATGTTAGTCAACAGAATTCATAAGCCATA
TCTTTGTAATATATGTAAAAAAGCGACGGGTGTGAAGGCATGTAAATGTCAGAAAGCATT
CTACTGTTCGCGTAATTGCCAAAAAATTGATTGGAATGTACACAAGAGCGATTGTCTTTA
TAAATTCACAGATCCTCGTGCAATCACAACAAAGAAAACGAACAACAGTACAGACCCAAA
TAATACTTCACATGATATATTGCTGCAAGAACAACAACAACAACGATTCACAAATTCGGA
TAACGCAACACTAATGCAACAGACTGAACAACAACACGAACGTACGATTACATTAGACAG
AGAGAGACGGACATATGATCCAACACCACTACAATATCAACAACCGCATGTCACTTATAC
ACCTAACACATTTACGACAACATCAACACATATACAACATAGCACATCGACATCGAATGA
GGCAGTAGATGATTTTGAAGAAAATTTGTTCAATTCATTGATGTATTCAGTCGTGAACGA
AAGTACTGAGCAAGAAATACTGAAAAATTTAAACATACGTGCAGACGATTTACTTACAAC
ATATTCACTGGATAGCGATATTTCTTCATCATTAAACGATACTCAATCATTGAAAGAGTA
CGTGCCAAATTTAAATTCAGTCGATCAAACGCTAAGCGACAAAATTTTCAATCAAGAAGC
CTTCGAAATTAGACCTGAAACGCAAAAATTATTAGCTGAAACAAAAGAAACACTAGAAAA
AGAATTGTCATTGTTTTGTGAGAATAATCTGAATGAGAAGGATCAAATGATGCAGTTAGG
CACAACAAATCCAAAATATGTTACCCACACGAAAGTTCAAGATAATAA
>g673.t7 Gene=g673 Length=285
MLVNRIHKPYLCNICKKATGVKACKCQKAFYCSRNCQKIDWNVHKSDCLYKFTDPRAITT
KKTNNSTDPNNTSHDILLQEQQQQRFTNSDNATLMQQTEQQHERTITLDRERRTYDPTPL
QYQQPHVTYTPNTFTTTSTHIQHSTSTSNEAVDDFEENLFNSLMYSVVNESTEQEILKNL
NIRADDLLTTYSLDSDISSSLNDTQSLKEYVPNLNSVDQTLSDKIFNQEAFEIRPETQKL
LAETKETLEKELSLFCENNLNEKDQMMQLGTTNPKYVTHTKVQDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g673.t7 | Gene3D | G3DSA:3.30.60.180 | - | 3 | 49 | 8.4E-9 |
| 1 | g673.t7 | Pfam | PF01753 | MYND finger | 12 | 48 | 1.6E-8 |
| 5 | g673.t7 | ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 12 | 48 | 11.127 |
| 2 | g673.t7 | SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 6 | 50 | 1.57E-8 |
| 3 | g673.t7 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
