General information for g6732.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium channel protein 60E.
Parent gene
- The parent gene g6732 is located on chr_2: 18349629..18357844 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6732 | g6732.t1 | TSS | g6732.t1 | 18349395 | 18349395 |
| chr_2 | g6732 | g6732.t1 | isoform | g6732.t1 | 18349629 | 18357844 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon1 | 18349629 | 18349654 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS1 | 18349629 | 18349654 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon2 | 18349727 | 18350912 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS2 | 18349727 | 18350912 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon3 | 18350975 | 18351190 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS3 | 18350975 | 18351190 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon4 | 18351251 | 18351383 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS4 | 18351251 | 18351383 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon5 | 18351612 | 18351829 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS5 | 18351612 | 18351829 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon6 | 18351942 | 18352112 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS6 | 18351942 | 18352112 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon7 | 18352177 | 18352473 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS7 | 18352177 | 18352473 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon8 | 18352549 | 18354201 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS8 | 18352549 | 18354201 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon9 | 18354276 | 18354673 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS9 | 18354276 | 18354673 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon10 | 18354737 | 18354911 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS10 | 18354737 | 18354911 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon11 | 18354974 | 18355283 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS11 | 18354974 | 18355283 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon12 | 18355343 | 18355718 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS12 | 18355343 | 18355718 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon13 | 18355780 | 18355928 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS13 | 18355780 | 18355928 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon14 | 18355983 | 18356186 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS14 | 18355983 | 18356186 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon15 | 18356244 | 18356523 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS15 | 18356244 | 18356523 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon16 | 18356607 | 18356718 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS16 | 18356607 | 18356718 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon17 | 18356773 | 18356939 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS17 | 18356773 | 18356939 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon18 | 18357000 | 18357274 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS18 | 18357000 | 18357274 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon19 | 18357327 | 18357512 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS19 | 18357327 | 18357512 |
| chr_2 | g6732 | g6732.t1 | exon | g6732.t1.exon20 | 18357582 | 18357844 |
| chr_2 | g6732 | g6732.t1 | cds | g6732.t1.CDS20 | 18357582 | 18357844 |
| chr_2 | g6732 | g6732.t1 | TTS | g6732.t1 | NA | NA |
Sequences
>g6732.t1 Gene=g6732 Length=6795
ATGAGCGAAACAATAGAAGAAGCTGAATTCTTTTTTTTGGCCATTTATACGATCGAAATG
TGCATTAAAATAATTGCGAAAGGTTTCGTCCTAAATAAATATACGTATTTGAGAAATCCA
TGGAACTGGTTAGACTTTCTTGTCATTGCTAGTGGTTATGCAACTATTGGCTTGGATGTA
GGAAATCTCGCTGGTTTACGAACTTTTCGCGTGTTGAGAGCTTTAAAAACAGTTTCGATT
ATGCCTGGTCTTAAAACTATTATCAATGCACTTCTTCATTCTTTTAAGCAGTTGGCTGAA
GTTATGACTTTAACAATATTTTGTTTAATGGTATTTGCACTTTTCGCTCTTCAAGTTTAT
ATGGGCGAATTGAGGAATAAATGCGTTCAAAATCATCCCGAATGGTGGACAAATGTCACA
GATGAAGAATGGTATGGTTGGATAAGTAATTCTTCAAATTGGGTTTACATGGATGATGAT
ATGCCAATGCTATGCGGAAATTTAACTGGTGCACAGCATTGTGAAAAAGGTTACACATGC
TTATGTGTGGGCGAAAATCCAAACCACGGATATACGAATTTTGACAATTTCATGTGGAGC
ATGCTTACAACATTCCAATTAATTACATTAGATTATTGGGAAAATACTTATAATATGATC
CTTGCAACCTGTGGTCCAATGAGTGTCAGTTTTTTTACGATTGTCGTTTTCTTTGGTTCA
TTTTATTTAATAAACCTAATGTTGGCTGTTGTCGCATTATCTTATGAAGAAGAAGCAGAA
ATTACACAAGAGGAAAGACGTAAAGATTTAATTGATCATCGCGATGATTCGACATTTAGT
TTTGATCCTACAAATTTAAATTTGAAGCAATTAAGTAAGCAAGCAAGTAAGAAGTTTGAT
TCAAAGAGAAACATTTTAATGGCATCATATTCACGAAAAAAGACTCGTCGACGGAAGAAA
GGCAAAGAGGGAAAAGCACAGAACAATAATTCTAATATTAATACAAATAGTGGTAATGTT
AATAACAAATTAAATTCTGGTGGTAACAATAATGAAAATATAGATGATAATAATAAATCA
AATGACGATATTATAAAGAGTCGATCAGCAACTCCATCTTCAAATCCAAGTCCACGACAT
AGCACAATCGTCATAAAACCTCCACAGACATTAGCACTTTCAAAAACCAGAGGATTATTG
CAACAAGCACAGCTCAATCAATTACAGCAACAGTGTAATGTGGGTACAAATGAAGAAACT
GAAAACTCCAATACACTACATCCGTTAAGAGGTCAGATGTCGAGTCGTCAAGCAAGCTCA
AATAGAGACTCTTCTCTCGATGATTCTGGTGTGGTAGATGATCATGAAGATAATAATGAT
AATCAAGAACAAGAAGTAGAAAATGTGCATCAAAGCAGTAATATGGAGGTAACATTGGCT
CTATCACCGAAAGAAGTGAAAATAGTCAAATGCAACGGTAATAATTTAAGTCGTAATAAG
AAAAAGCACGATGTTTATGCATTACATCCTGATTATTTGTCTCAATCAATAGTTGTCATA
GATGATTTTCCTGACGATCGAAACTGTGAATGTTGTATTCATTGTTGTTTCAATTATGAT
AGCTGGCTATCATTTCAAAATATATTGTATCAAATCGTTAAAGATCCATTGTTTGAATTA
TTTATAACCCTGTGTATTGTTTTAAATACAACCTTCCTTGCGCTCGAACATCATGGAATG
AGTGAAACCGTTAGATCAGTGTTAGATATAGGAAATAAGGTTTTCACATTAATTTTTACC
CTCGAATGCATATTGAAAGTACTATCACTATCAAAAGAATTTTTCATGTGTGGCTGGAAT
ATTTTCGATTTATGTATTGTAACAGCAAGTATTTTGGATCTTATATTTGAACTCGTCGAT
GGTTTAAGTGTATTGCGAGGACTTAGATTATTGAGAGTTTTAAAATTAGCACAATCGTGG
GTTACAATGCGAGTTCTTCTTAGTATTATTCTGTCAACAATTGGTGCTTTAGGAAATTTA
ACATTCATTTTGGTGATTGTTATTTATATTTTCGCAGTTATTGGAATGCAACTATTTGGA
AAGGATTATACAAAAGAAAAATTTTATCCAGATCCAGTACCTCGCTGGAATTTTAACGAC
TTTTTTCACTCATTTATGATGATTTTTCGAATTTTGTGTGGTGAATGGATTGAACCATTA
TGGGATTGCTTACGAGCTGAAGAAGCTAGTGGTTCAAAAAGTTCATGCTTTGCAATATTT
CTTCCGGCATTAGTAATGGGAAACTTTATGGTATTGAACTTGTTCTTGGCTCTTTTGCTC
AATAGTTTCAACTCAGAAGAATTGAAATCAAGGAAAGAAGAAGTTGGGGATGAATCACGA
TTGGCAAAAAGTTTTGAACGACTAAGATCTATTGTACGTAAAGGTCGTTTGCAGAGAGAT
AACTCAAGCGAAAAAGGAGAAACAAAGCTCGAAAAATTAGTGCATGAAATAGTTTTAAAA
CAAAAACAAGCTGAGTTAAAGAATAAAGGAATTCTTAGTGATTCTTCGAAAAAGCAACAG
CAGTATCCGCTTCGAGAAAATCGTTCGTCGCCACCGTTACCGATTTATTCAAAAAGTTAT
CAGGAATCGTTAAATCGGCCTATTTCATCGACGTGTGACATACAGGAAATAAATTTAAAT
AATGTAAATACAATTTCGGGTAGTCAAGAAACCGTGACAGAAATAGATGAACTACAATTG
CCAGACGACAGAAAACGAAATAAGTTTAATTTTAATAATAATGAGAGTAATAATAATAAT
AATAATAATAATAATAATGGAATTCTTCATCAAATGTCTTCCGGTTTTGGCACTCAACAA
AGCAAAGATGAGCCTTTAGATTTTAATGAAGCTGTTGAATTAAGAACGCTTGGTCAATTT
AACACCACAAGTAACAGTAACATCACTAAAGGTTTACCTCAGCAAACACAAATGAGACAA
TCGTGTCCTTTGCCAAGACAACATTATAATTCACAAGCGCATGCAATCGATACTAATAGC
AATAGCAGTAGTTGTACATATAGTGAAATTAGTAAACAGCTAAAGCGATTATCTAGCAAT
CAATCTATCAATACTTTATCTTTAGACCAAGATGAATTCTTAAATCACCTAAATCACATC
AACTTAAAAGATGAACTTTTGAACTGCGATAAAAAAGAGCTTTTTCAATTTCTGAGAGAT
GAAAAATTATTTGATAGTTTTTATAACGAACCAGTTTCTTCTGAACCACCACAGCCAAAT
GAAGTGAGAAAATCTGTACACATTCAGGAAGATATTGAATTATTCAAAAGTCCTGAAAGA
CAACTTCGAGACTGTGAAAAACTTCCATCCGTTACTAAAATGTCTGAAATTGATCAATCA
ACAGGGAAACCATGGCAGTGTCTGGTTTCTTATGTCGATGATTTAACTGTGGGCGGACGT
CGAAATTCACAAGGTGGATATGACGATCCAAATTTTCTCGGTTATGGTCGTAACAAAACA
CCCAAAATTCCACAAGATTGCTTTCCAAGAAAATGCTATGAACGATGTCCATGTTGGGAT
GAATGGATAAAATCTAAAGCAGGTCAGAAATGGATGAAAATAAGAACATCTGTTCTCCAA
GTTGTCGACACACCCACATTCGAATGGATAATTTTATTTCTGATTTTTGCATCGTCAATA
ACACTTTGCTTTGAAGATATTCATCTCGATAAAAATAAGGATCTCAAGAGAATTCTTTAT
TGGACAAATTTATTCTTTTGTATTATATTTGTTGTAGAAATGTTAATGAAATGGGTTGCT
CATGGATTCACCAAATATTTTTCAAGCTTTTGGACAATTTTAGATTTTACAATAGTTTTT
GTTTCAGTTTTTTCGTTACTCATTGAGGAAAATGAAAACTTAAAGGTTTTAAGATCTTTA
AGGACACTTCGAGCATTGAGACCATTAAGAGCAATATCACGATGGCAAGGAATGCGAATT
GTTGTTAATGCGCTCATGTATGCCATACCTTCTATATTTAACGTCCTACTTGTTTGTCTT
GTATTTTGGTTAATATTCAGTATAATGGGTGTACAATTTTTTGGAGGAAAATTTTTTAAA
TGTGTCGATGAAGATGGAGAAATTTTGCCAATATCAGTGGTTAATGATAGATGGCAATGT
ATGAACTTGAATTACACTTGGATAAACTCAAAAATTACGTTCGATCATGTTGGAATGGGT
TATTTGGCTTTATTTCAAATTGCTACATTTGAGGGATGGATGGAAGTAATGGCTGATGCT
GTTGATAGTCGAGGTGTTGATCTTCAACCCTCACGTGAAGCTAGCTTATATGCCTACATA
TATTTTGTAATATTCATCATTTGCGGATCATTCTTTACACTTAATCTTTTTATTGGAGTT
ATTATTGACAACTTTAATATGTTAAAGAAGAAGTATGAGGGAGGAATTTTAGAAATGTTT
CTAACACCCTCACAAAAAAGTTATTATTGTGCGATGAAGAAGCTTGGACGAAAGAAACCC
CAAAAAGTTATCAAAAGGCCTTTGAATCAAATTTTAGCTATGTTTTACGATTTAGCAAAT
TCACGTAGATTTGAAATTGCTATATTTGTTTTAATATTTCTAAATATGCTGTCCATGGGT
ATTGAGCACTATGATCAACCTCATGCAGTTTTTTTCATACTAGAAGTTAGTAATGCATTC
TTCACTACCGTATTTGGTTTAGAATGTATCGTCAAAATTATCGGACTAAGATATCACTAT
TTTACTGTGCCATGGAACATGTTCGATTTTCTTCTTGTGCTTGCTTCAATTTTCGGTATT
TTAATGGAAGACATTATGATCGATTTACCTATATCTCCCACACTTTTGCGAGTTGTTCGA
GTATTTCGAATAGGCAGAATATTAAGACTCATAAAAGCTGCCAAAGGCATAAGAAAGCTT
TTGTTTGCTCTTGTTGTGTCATTACCAGCACTCTTTAATATCGGAGCATTATTAGCACTT
CTGTTATTCGTTTATGCAATCCTCGGTATGTCACTTTTTGGTCACGTCAAAAAACAAGGT
GCTCTTAGTCAAATGGTCAATTTTGAAACATTTGGAAGTAGCATGCAACTTTTATTCAGA
TTAATGACATCAGCGGGATGGAATGACGTATTAGAGTCTTTAATGATTCAACCACCTGAT
TGTGATATTCATTTGGAAACATCTTCCAATGGAGATTGTGGTCATCCACTACTTGCTATC
ACTTATTTTACATCATTTATAATTATCAGTTACATGATTGTTATTAACATGTATATTGCC
ATCATATTAGAGAATTTTAATCAAGCACATCAGGAAGAAGAAGTTGGCATCGTTGAGGAT
GATCTAGAAATGTTTTACATACGATGGTCAAAATATGATCCACATGCATCTCAATTCATA
TCATTTTCGCAACTATCAGACTTTATTGCTTCATTAGATCCACCATTAGGAATTCCTAAA
CCAAATACAGTGGCACTTGTTTCTTTTAATCTTCCAATATCAAAAGGAAATAAAATCCAT
TGTTTAGATATTTTACATGCATTAGTCAAGCATGTTTTAGGTCACGTAGATGAAAGTGAT
ACATTTAAACAATTGCAAGATTCTATGGATGTAAAGTTTAAAAAACAATTTCCAACAAGG
AAAGAAATAGAAATAGTCTCATCTACAAGAATTTGGAAGCGCCAAGAACGTGCAGCAAAA
ACGATTCAGACTGCATGGAGGGAATACTTGAGGTTAAAAAGAGAAAGAGAACGTTCACCG
ATGTCAGGCGATGACGATCAAACTCAAACTTCTAGTCCTGGTTGGCATACCAAATTATCT
GCTCTTAATTTTCTTCATTTACAAATTCATCGTCGTTGCTCACGCACTTCAAGTCGTTGC
TCAAGTCGAAAATCATCACGGGCATCAGGAGATTCAGATATGAGTGAACTTGCAGGACCA
TGGCTAAATTTACCAATTCTTGTAGCCGGTACAACGGATCTTGTTAAAAACACTGATTCT
GATGTTAAAAAAGATTTAGCTGCACCACCAGAAGGCAAGCCAACACGTAGAAAAAGTATA
TATAATTTCTTATTGGGTAGGCAGGACGCAGTTGATGACCACCTCACTTCTCCATCTGTA
CACAAAAAGATAATAAAGCCAAATGAAACATCTGATACCAAAGAAGCTCTCACTTCGCCA
CCATCAAAGAATAAACGTGCATCTAGTTTCATAAAAAAGAAACCACGGTTAGAGCGAGGT
CTTTCAGATCATAGTGTGTTACGACTCAACAAAAATGCAAATTTAGATGTTGATAATGCA
CCGTCGTCAAATGTAGATGTGAGCATCTTGGTCACTGAAGCCTCACCAAATGAAGAATCA
TGTTCTGGACCAAATATTTCCTCCAATCAAACTCTTATTCATCATGTGATTGTGCATCGT
GAGAGTGAAGAATATCATGATCTTGATGAAGTAGTTGTTGATGATAAATCAAGTACAATT
AAATCAACTGAATTAGTGTCTACATCGATGAAAAATGAAACAATTAATCATCCGATTGTG
AAAATTTGTGTAGACTCGCCAAAAGAGGAAGAACAAAAATCACTTGCTCAAACACCGGAT
GTAGAAAGAATTATTTTGGAGAGATCATCTCTTGCAGCCGAAATCTCGGAAAGTTCAAAT
GTTAATGTAGACGAGCCAATAGATATAAACCTTGCAAATACGTGCGATACTTCGAAAGTG
ATTTATGACTATTAA
>g6732.t1 Gene=g6732 Length=2264
MSETIEEAEFFFLAIYTIEMCIKIIAKGFVLNKYTYLRNPWNWLDFLVIASGYATIGLDV
GNLAGLRTFRVLRALKTVSIMPGLKTIINALLHSFKQLAEVMTLTIFCLMVFALFALQVY
MGELRNKCVQNHPEWWTNVTDEEWYGWISNSSNWVYMDDDMPMLCGNLTGAQHCEKGYTC
LCVGENPNHGYTNFDNFMWSMLTTFQLITLDYWENTYNMILATCGPMSVSFFTIVVFFGS
FYLINLMLAVVALSYEEEAEITQEERRKDLIDHRDDSTFSFDPTNLNLKQLSKQASKKFD
SKRNILMASYSRKKTRRRKKGKEGKAQNNNSNINTNSGNVNNKLNSGGNNNENIDDNNKS
NDDIIKSRSATPSSNPSPRHSTIVIKPPQTLALSKTRGLLQQAQLNQLQQQCNVGTNEET
ENSNTLHPLRGQMSSRQASSNRDSSLDDSGVVDDHEDNNDNQEQEVENVHQSSNMEVTLA
LSPKEVKIVKCNGNNLSRNKKKHDVYALHPDYLSQSIVVIDDFPDDRNCECCIHCCFNYD
SWLSFQNILYQIVKDPLFELFITLCIVLNTTFLALEHHGMSETVRSVLDIGNKVFTLIFT
LECILKVLSLSKEFFMCGWNIFDLCIVTASILDLIFELVDGLSVLRGLRLLRVLKLAQSW
VTMRVLLSIILSTIGALGNLTFILVIVIYIFAVIGMQLFGKDYTKEKFYPDPVPRWNFND
FFHSFMMIFRILCGEWIEPLWDCLRAEEASGSKSSCFAIFLPALVMGNFMVLNLFLALLL
NSFNSEELKSRKEEVGDESRLAKSFERLRSIVRKGRLQRDNSSEKGETKLEKLVHEIVLK
QKQAELKNKGILSDSSKKQQQYPLRENRSSPPLPIYSKSYQESLNRPISSTCDIQEINLN
NVNTISGSQETVTEIDELQLPDDRKRNKFNFNNNESNNNNNNNNNNGILHQMSSGFGTQQ
SKDEPLDFNEAVELRTLGQFNTTSNSNITKGLPQQTQMRQSCPLPRQHYNSQAHAIDTNS
NSSSCTYSEISKQLKRLSSNQSINTLSLDQDEFLNHLNHINLKDELLNCDKKELFQFLRD
EKLFDSFYNEPVSSEPPQPNEVRKSVHIQEDIELFKSPERQLRDCEKLPSVTKMSEIDQS
TGKPWQCLVSYVDDLTVGGRRNSQGGYDDPNFLGYGRNKTPKIPQDCFPRKCYERCPCWD
EWIKSKAGQKWMKIRTSVLQVVDTPTFEWIILFLIFASSITLCFEDIHLDKNKDLKRILY
WTNLFFCIIFVVEMLMKWVAHGFTKYFSSFWTILDFTIVFVSVFSLLIEENENLKVLRSL
RTLRALRPLRAISRWQGMRIVVNALMYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFK
CVDEDGEILPISVVNDRWQCMNLNYTWINSKITFDHVGMGYLALFQIATFEGWMEVMADA
VDSRGVDLQPSREASLYAYIYFVIFIICGSFFTLNLFIGVIIDNFNMLKKKYEGGILEMF
LTPSQKSYYCAMKKLGRKKPQKVIKRPLNQILAMFYDLANSRRFEIAIFVLIFLNMLSMG
IEHYDQPHAVFFILEVSNAFFTTVFGLECIVKIIGLRYHYFTVPWNMFDFLLVLASIFGI
LMEDIMIDLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLAL
LLFVYAILGMSLFGHVKKQGALSQMVNFETFGSSMQLLFRLMTSAGWNDVLESLMIQPPD
CDIHLETSSNGDCGHPLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEVGIVED
DLEMFYIRWSKYDPHASQFISFSQLSDFIASLDPPLGIPKPNTVALVSFNLPISKGNKIH
CLDILHALVKHVLGHVDESDTFKQLQDSMDVKFKKQFPTRKEIEIVSSTRIWKRQERAAK
TIQTAWREYLRLKRERERSPMSGDDDQTQTSSPGWHTKLSALNFLHLQIHRRCSRTSSRC
SSRKSSRASGDSDMSELAGPWLNLPILVAGTTDLVKNTDSDVKKDLAAPPEGKPTRRKSI
YNFLLGRQDAVDDHLTSPSVHKKIIKPNETSDTKEALTSPPSKNKRASSFIKKKPRLERG
LSDHSVLRLNKNANLDVDNAPSSNVDVSILVTEASPNEESCSGPNISSNQTLIHHVIVHR
ESEEYHDLDEVVVDDKSSTIKSTELVSTSMKNETINHPIVKICVDSPKEEEQKSLAQTPD
VERIILERSSLAAEISESSNVNVDEPIDINLANTCDTSKVIYDY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 69 | g6732.t1 | CDD | cd13433 | Na_channel_gate | 1483 | 1537 | 5.78501E-25 |
| 23 | g6732.t1 | Coils | Coil | Coil | 452 | 472 | - |
| 20 | g6732.t1 | Gene3D | G3DSA:1.20.120.350 | - | 1 | 82 | 4.2E-17 |
| 14 | g6732.t1 | Gene3D | G3DSA:1.10.287.70 | - | 167 | 259 | 7.5E-12 |
| 18 | g6732.t1 | Gene3D | G3DSA:1.20.120.350 | - | 547 | 665 | 1.5E-30 |
| 16 | g6732.t1 | Gene3D | G3DSA:1.10.287.70 | - | 666 | 788 | 1.1E-18 |
| 21 | g6732.t1 | Gene3D | G3DSA:1.20.120.350 | - | 1215 | 1335 | 5.4E-29 |
| 17 | g6732.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1337 | 1484 | 1.5E-24 |
| 19 | g6732.t1 | Gene3D | G3DSA:1.20.120.350 | - | 1532 | 1654 | 1.6E-33 |
| 15 | g6732.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1656 | 1788 | 5.1E-22 |
| 22 | g6732.t1 | Gene3D | G3DSA:1.10.238.10 | - | 1789 | 1909 | 1.1E-42 |
| 89 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 357 | - |
| 92 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 355 | - |
| 86 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 452 | - |
| 88 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 446 | - |
| 90 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 873 | - |
| 91 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1976 | 1995 | - |
| 93 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2058 | 2095 | - |
| 87 | g6732.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2071 | 2086 | - |
| 6 | g6732.t1 | PANTHER | PTHR10037 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM | 3 | 2089 | 0.0 |
| 7 | g6732.t1 | PANTHER | PTHR10037:SF62 | SODIUM CHANNEL PROTEIN 60E | 3 | 2089 | 0.0 |
| 9 | g6732.t1 | PRINTS | PR00170 | Voltage-gated Na+ channel alpha subunit signature | 1765 | 1784 | 3.5E-9 |
| 8 | g6732.t1 | PRINTS | PR00170 | Voltage-gated Na+ channel alpha subunit signature | 1800 | 1813 | 3.5E-9 |
| 1 | g6732.t1 | Pfam | PF00520 | Ion transport protein | 8 | 260 | 1.1E-58 |
| 2 | g6732.t1 | Pfam | PF00520 | Ion transport protein | 556 | 787 | 1.1E-48 |
| 3 | g6732.t1 | Pfam | PF00520 | Ion transport protein | 1225 | 1491 | 8.2E-64 |
| 4 | g6732.t1 | Pfam | PF00520 | Ion transport protein | 1543 | 1793 | 1.7E-51 |
| 5 | g6732.t1 | Pfam | PF16905 | Voltage-dependent L-type calcium channel, IQ-associated | 1805 | 1840 | 1.1E-6 |
| 24 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 67 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 31 | - |
| 42 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 32 | 42 | - |
| 57 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 66 | - |
| 35 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 67 | 77 | - |
| 51 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 78 | 95 | - |
| 39 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 96 | 100 | - |
| 58 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 121 | - |
| 29 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 122 | 228 | - |
| 62 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 255 | - |
| 37 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 256 | 556 | - |
| 61 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 557 | 575 | - |
| 25 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 576 | 586 | - |
| 63 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 587 | 609 | - |
| 43 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 610 | 620 | - |
| 54 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 621 | 645 | - |
| 30 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 646 | 664 | - |
| 64 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 665 | 698 | - |
| 40 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 699 | 717 | - |
| 60 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 718 | 737 | - |
| 27 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 738 | 756 | - |
| 55 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 757 | 780 | - |
| 46 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 781 | 1228 | - |
| 50 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1229 | 1247 | - |
| 31 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1248 | 1258 | - |
| 49 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1259 | 1280 | - |
| 38 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1281 | 1285 | - |
| 47 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1286 | 1308 | - |
| 32 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1309 | 1339 | - |
| 65 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1340 | 1366 | - |
| 44 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1367 | 1457 | - |
| 53 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1458 | 1482 | - |
| 33 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1483 | 1543 | - |
| 48 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1544 | 1564 | - |
| 36 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1565 | 1569 | - |
| 56 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1570 | 1591 | - |
| 34 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1592 | 1602 | - |
| 68 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1603 | 1621 | - |
| 41 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1622 | 1626 | - |
| 66 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1627 | 1648 | - |
| 28 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1649 | 1659 | - |
| 59 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1660 | 1688 | - |
| 45 | g6732.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1689 | 1758 | - |
| 52 | g6732.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1759 | 1783 | - |
| 26 | g6732.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1784 | 2264 | - |
| 13 | g6732.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 7 | 257 | 3.77E-23 |
| 12 | g6732.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 556 | 784 | 2.43E-29 |
| 10 | g6732.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 1224 | 1486 | 2.12E-36 |
| 11 | g6732.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 1541 | 1789 | 1.49E-32 |
| 85 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 81 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 66 | - |
| 80 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 120 | - |
| 75 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 251 | - |
| 82 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 673 | 695 | - |
| 72 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 757 | 779 | - |
| 78 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1225 | 1244 | - |
| 84 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1257 | 1276 | - |
| 71 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1286 | 1308 | - |
| 77 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1344 | 1366 | - |
| 74 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1460 | 1482 | - |
| 73 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1544 | 1561 | - |
| 79 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1571 | 1593 | - |
| 70 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1600 | 1622 | - |
| 83 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1674 | 1696 | - |
| 76 | g6732.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1757 | 1779 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006811 | ion transport | BP |
| GO:0005261 | cation channel activity | MF |
| GO:0005216 | ion channel activity | MF |
| GO:0001518 | voltage-gated sodium channel complex | CC |
| GO:0005248 | voltage-gated sodium channel activity | MF |
| GO:0005886 | plasma membrane | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K21862 (voltage-gated cation channel)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
