Gene loci information

Transcript annotation

  • This transcript has been annotated as Sodium channel protein 60E.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6732 g6732.t2 TSS g6732.t2 18349395 18349395
chr_2 g6732 g6732.t2 isoform g6732.t2 18349629 18357844
chr_2 g6732 g6732.t2 exon g6732.t2.exon1 18349629 18349654
chr_2 g6732 g6732.t2 cds g6732.t2.CDS1 18349629 18349654
chr_2 g6732 g6732.t2 exon g6732.t2.exon2 18349727 18350912
chr_2 g6732 g6732.t2 cds g6732.t2.CDS2 18349727 18350912
chr_2 g6732 g6732.t2 exon g6732.t2.exon3 18350975 18351190
chr_2 g6732 g6732.t2 cds g6732.t2.CDS3 18350975 18351190
chr_2 g6732 g6732.t2 exon g6732.t2.exon4 18351251 18351383
chr_2 g6732 g6732.t2 cds g6732.t2.CDS4 18351251 18351383
chr_2 g6732 g6732.t2 exon g6732.t2.exon5 18351612 18351829
chr_2 g6732 g6732.t2 cds g6732.t2.CDS5 18351612 18351829
chr_2 g6732 g6732.t2 exon g6732.t2.exon6 18351942 18352112
chr_2 g6732 g6732.t2 cds g6732.t2.CDS6 18351942 18352112
chr_2 g6732 g6732.t2 exon g6732.t2.exon7 18352177 18352473
chr_2 g6732 g6732.t2 cds g6732.t2.CDS7 18352177 18352473
chr_2 g6732 g6732.t2 exon g6732.t2.exon8 18352549 18354201
chr_2 g6732 g6732.t2 cds g6732.t2.CDS8 18352549 18354201
chr_2 g6732 g6732.t2 exon g6732.t2.exon9 18354276 18354673
chr_2 g6732 g6732.t2 cds g6732.t2.CDS9 18354276 18354673
chr_2 g6732 g6732.t2 exon g6732.t2.exon10 18354737 18354911
chr_2 g6732 g6732.t2 cds g6732.t2.CDS10 18354737 18354911
chr_2 g6732 g6732.t2 exon g6732.t2.exon11 18354974 18355283
chr_2 g6732 g6732.t2 cds g6732.t2.CDS11 18354974 18355283
chr_2 g6732 g6732.t2 exon g6732.t2.exon12 18355343 18355718
chr_2 g6732 g6732.t2 cds g6732.t2.CDS12 18355343 18355718
chr_2 g6732 g6732.t2 exon g6732.t2.exon13 18355780 18355928
chr_2 g6732 g6732.t2 cds g6732.t2.CDS13 18355780 18355928
chr_2 g6732 g6732.t2 exon g6732.t2.exon14 18355983 18356186
chr_2 g6732 g6732.t2 cds g6732.t2.CDS14 18355983 18356186
chr_2 g6732 g6732.t2 exon g6732.t2.exon15 18356244 18356523
chr_2 g6732 g6732.t2 cds g6732.t2.CDS15 18356244 18356523
chr_2 g6732 g6732.t2 exon g6732.t2.exon16 18356607 18356718
chr_2 g6732 g6732.t2 cds g6732.t2.CDS16 18356607 18356718
chr_2 g6732 g6732.t2 exon g6732.t2.exon17 18356773 18356939
chr_2 g6732 g6732.t2 cds g6732.t2.CDS17 18356773 18356939
chr_2 g6732 g6732.t2 exon g6732.t2.exon18 18357000 18357274
chr_2 g6732 g6732.t2 cds g6732.t2.CDS18 18357000 18357274
chr_2 g6732 g6732.t2 exon g6732.t2.exon19 18357357 18357512
chr_2 g6732 g6732.t2 cds g6732.t2.CDS19 18357357 18357512
chr_2 g6732 g6732.t2 exon g6732.t2.exon20 18357582 18357844
chr_2 g6732 g6732.t2 cds g6732.t2.CDS20 18357582 18357844
chr_2 g6732 g6732.t2 TTS g6732.t2 NA NA

Sequences

>g6732.t2 Gene=g6732 Length=6765
ATGAGCGAAACAATAGAAGAAGCTGAATTCTTTTTTTTGGCCATTTATACGATCGAAATG
TGCATTAAAATAATTGCGAAAGGTTTCGTCCTAAATAAATATACGTATTTGAGAAATCCA
TGGAACTGGTTAGACTTTCTTGTCATTGCTAGTGGTTATGCAACTATTGGCTTGGATGTA
GGAAATCTCGCTGGTTTACGAACTTTTCGCGTGTTGAGAGCTTTAAAAACAGTTTCGATT
ATGCCTGGTCTTAAAACTATTATCAATGCACTTCTTCATTCTTTTAAGCAGTTGGCTGAA
GTTATGACTTTAACAATATTTTGTTTAATGGTATTTGCACTTTTCGCTCTTCAAGTTTAT
ATGGGCGAATTGAGGAATAAATGCGTTCAAAATCATCCCGAATGGTGGACAAATGTCACA
GATGAAGAATGGTATGGTTGGATAAGTAATTCTTCAAATTGGGTTTACATGGATGATGAT
ATGCCAATGCTATGCGGAAATTTAACTGGTGCACAGCATTGTGAAAAAGGTTACACATGC
TTATGTGTGGGCGAAAATCCAAACCACGGATATACGAATTTTGACAATTTCATGTGGAGC
ATGCTTACAACATTCCAATTAATTACATTAGATTATTGGGAAAATACTTATAATATGATC
CTTGCAACCTGTGGTCCAATGAGTGTCAGTTTTTTTACGATTGTCGTTTTCTTTGGTTCA
TTTTATTTAATAAACCTAATGTTGGCTGTTGTCGCATTATCTTATGAAGAAGAAGCAGAA
ATTACACAAGAGGAAAGACGTAAAGATTTAATTGATCATCGCGATGATTCGACATTTAGT
TTTGATCCTACAAATTTAAATTTGAAGCAATTAAGTAAGCAAGCAAGTAAGAAGTTTGAT
TCAAAGAGAAACATTTTAATGGCATCATATTCACGAAAAAAGACTCGTCGACGGAAGAAA
GGCAAAGAGGGAAAAGCACAGAACAATAATTCTAATATTAATACAAATAGTGGTAATGTT
AATAACAAATTAAATTCTGGTGGTAACAATAATGAAAATATAGATGATAATAATAAATCA
AATGACGATATTATAAAGAGTCGATCAGCAACTCCATCTTCAAATCCAAGTCCACGACAT
AGCACAATCGTCATAAAACCTCCACAGACATTAGCACTTTCAAAAACCAGAGGATTATTG
CAACAAGCACAGCTCAATCAATTACAGCAACAGTGTAATGTGGGTACAAATGAAGAAACT
GAAAACTCCAATACACTACATCCGTTAAGAGGTCAGATGTCGAGTCGTCAAGCAAGCTCA
AATAGAGACTCTTCTCTCGATGATTCTGGTGTGGTAGATGATCATGAAGATAATAATGAT
AATCAAGAACAAGAAGTAGAAAATGTGCATCAAAGCAGTAATATGGAGGTAACATTGGCT
CTATCACCGAAAGAAGTGAAAATAGTCAAATGCAACGGTAATAATTTAAGTCGTAATAAG
AAAAAGCACGATGTTTATGCATTACATCCTGATTATTTGTCTCAATCAATAGTTGTCATA
GATGATTTTCCTGACGATCGAAACTGTGAATGTTGTATTCATTGTTGTTTCAATTATGAT
AGCTGGCTATCATTTCAAAATATATTGTATCAAATCGTTAAAGATCCATTGTTTGAATTA
TTTATAACCCTGTGTATTGTTTTAAATACAACCTTCCTTGCGCTCGAACATCATGGAATG
AGTGAAACCGTTAGATCAGTGTTAGATATAGGAAATAAGGTTTTCACATTAATTTTTACC
CTCGAATGCATATTGAAAGTACTATCACTATCAAAAGAATTTTTCATGTGTGGCTGGAAT
ATTTTCGATTTATGTATTGTAACAGCAAGTATTTTGGATCTTATATTTGAACTCGTCGAT
GGTTTAAGTGTATTGCGAGGACTTAGATTATTGAGAGTTTTAAAATTAGCACAATCGTGG
GTTACAATGCGAGTTCTTCTTAGTATTATTCTGTCAACAATTGGTGCTTTAGGAAATTTA
ACATTCATTTTGGTGATTGTTATTTATATTTTCGCAGTTATTGGAATGCAACTATTTGGA
AAGGATTATACAAAAGAAAAATTTTATCCAGATCCAGTACCTCGCTGGAATTTTAACGAC
TTTTTTCACTCATTTATGATGATTTTTCGAATTTTGTGTGGTGAATGGATTGAACCATTA
TGGGATTGCTTACGAGCTGAAGAAGCTAGTGGTTCAAAAAGTTCATGCTTTGCAATATTT
CTTCCGGCATTAGTAATGGGAAACTTTATGGTATTGAACTTGTTCTTGGCTCTTTTGCTC
AATAGTTTCAACTCAGAAGAATTGAAATCAAGGAAAGAAGAAGTTGGGGATGAATCACGA
TTGGCAAAAAGTTTTGAACGACTAAGATCTATTGTACGTAAAGGTCGTTTGCAGAGAGAT
AACTCAAGCGAAAAAGGAGAAACAAAGCTCGAAAAATTAGTGCATGAAATAGTTTTAAAA
CAAAAACAAGCTGAGTTAAAGAATAAAGGAATTCTTAGTGATTCTTCGAAAAAGCAACAG
CAGTATCCGCTTCGAGAAAATCGTTCGTCGCCACCGTTACCGATTTATTCAAAAAGTTAT
CAGGAATCGTTAAATCGGCCTATTTCATCGACGTGTGACATACAGGAAATAAATTTAAAT
AATGTAAATACAATTTCGGGTAGTCAAGAAACCGTGACAGAAATAGATGAACTACAATTG
CCAGACGACAGAAAACGAAATAAGTTTAATTTTAATAATAATGAGAGTAATAATAATAAT
AATAATAATAATAATAATGGAATTCTTCATCAAATGTCTTCCGGTTTTGGCACTCAACAA
AGCAAAGATGAGCCTTTAGATTTTAATGAAGCTGTTGAATTAAGAACGCTTGGTCAATTT
AACACCACAAGTAACAGTAACATCACTAAAGGTTTACCTCAGCAAACACAAATGAGACAA
TCGTGTCCTTTGCCAAGACAACATTATAATTCACAAGCGCATGCAATCGATACTAATAGC
AATAGCAGTAGTTGTACATATAGTGAAATTAGTAAACAGCTAAAGCGATTATCTAGCAAT
CAATCTATCAATACTTTATCTTTAGACCAAGATGAATTCTTAAATCACCTAAATCACATC
AACTTAAAAGATGAACTTTTGAACTGCGATAAAAAAGAGCTTTTTCAATTTCTGAGAGAT
GAAAAATTATTTGATAGTTTTTATAACGAACCAGTTTCTTCTGAACCACCACAGCCAAAT
GAAGTGAGAAAATCTGTACACATTCAGGAAGATATTGAATTATTCAAAAGTCCTGAAAGA
CAACTTCGAGACTGTGAAAAACTTCCATCCGTTACTAAAATGTCTGAAATTGATCAATCA
ACAGGGAAACCATGGCAGTGTCTGGTTTCTTATGTCGATGATTTAACTGTGGGCGGACGT
CGAAATTCACAAGGTGGATATGACGATCCAAATTTTCTCGGTTATGGTCGTAACAAAACA
CCCAAAATTCCACAAGATTGCTTTCCAAGAAAATGCTATGAACGATGTCCATGTTGGGAT
GAATGGATAAAATCTAAAGCAGGTCAGAAATGGATGAAAATAAGAACATCTGTTCTCCAA
GTTGTCGACACACCCACATTCGAATGGATAATTTTATTTCTGATTTTTGCATCGTCAATA
ACACTTTGCTTTGAAGATATTCATCTCGATAAAAATAAGGATCTCAAGAGAATTCTTTAT
TGGACAAATTTATTCTTTTGTATTATATTTGTTGTAGAAATGTTAATGAAATGGGTTGCT
CATGGATTCACCAAATATTTTTCAAGCTTTTGGACAATTTTAGATTTTACAATAGTTTTT
GTTTCAGTTTTTTCGTTACTCATTGAGGAAAATGAAAACTTAAAGGTTTTAAGATCTTTA
AGGACACTTCGAGCATTGAGACCATTAAGAGCAATATCACGATGGCAAGGAATGCGAATT
GTTGTTAATGCGCTCATGTATGCCATACCTTCTATATTTAACGTCCTACTTGTTTGTCTT
GTATTTTGGTTAATATTCAGTATAATGGGTGTACAATTTTTTGGAGGAAAATTTTTTAAA
TGTGTCGATGAAGATGGAGAAATTTTGCCAATATCAGTGGTTAATGATAGATGGCAATGT
ATGAACTTGAATTACACTTGGATAAACTCAAAAATTACGTTCGATCATGTTGGAATGGGT
TATTTGGCTTTATTTCAAATTGCTACATTTGAGGGATGGATGGAAGTAATGGCTGATGCT
GTTGATAGTCGAGGTGTTGATCTTCAACCCTCACGTGAAGCTAGCTTATATGCCTACATA
TATTTTGTAATATTCATCATTTGCGGATCATTCTTTACACTTAATCTTTTTATTGGAGTT
ATTATTGACAACTTTAATATGTTAAAGAAGAAGTATGAGGGAGGAATTTTAGAAATGTTT
CTAACACCCTCACAAAAAAGTTATTATTGTGCGATGAAGAAGCTTGGACGAAAGAAACCC
CAAAAAGTTATCAAAAGGCCTTTGAATCAAATTTTAGCTATGTTTTACGATTTAGCAAAT
TCACGTAGATTTGAAATTGCTATATTTGTTTTAATATTTCTAAATATGCTGTCCATGGGT
ATTGAGCACTATGATCAACCTCATGCAGTTTTTTTCATACTAGAAGTTAGTAATGCATTC
TTCACTACCGTATTTGGTTTAGAATGTATCGTCAAAATTATCGGACTAAGATATCACTAT
TTTACTGTGCCATGGAACATGTTCGATTTTCTTCTTGTGCTTGCTTCAATTTTCGGTATT
TTAATGGAAGACATTATGATCGATTTACCTATATCTCCCACACTTTTGCGAGTTGTTCGA
GTATTTCGAATAGGCAGAATATTAAGACTCATAAAAGCTGCCAAAGGCATAAGAAAGCTT
TTGTTTGCTCTTGTTGTGTCATTACCAGCACTCTTTAATATCGGAGCATTATTAGCACTT
CTGTTATTCGTTTATGCAATCCTCGGTATGTCACTTTTTGGTCACGTCAAAAAACAAGGT
GCTCTTAGTCAAATGGTCAATTTTGAAACATTTGGAAGTAGCATGCAACTTTTATTCAGA
TTAATGACATCAGCGGGATGGAATGACGTATTAGAGTCTTTAATGATTCAACCACCTGAT
TGTGATATTCATTTGGAAACATCTTCCAATGGAGATTGTGGTCATCCACTACTTGCTATC
ACTTATTTTACATCATTTATAATTATCAGTTACATGATTGTTATTAACATGTATATTGCC
ATCATATTAGAGAATTTTAATCAAGCACATCAGGAAGAAGAAGTTGGCATCGTTGAGGAT
GATCTAGAAATGTTTTACATACGATGGTCAAAATATGATCCACATGCATCTCAATTCATA
TCATTTTCGCAACTATCAGACTTTATTGCTTCATTAGATCCACCATTAGGAATTCCTAAA
CCAAATACAGTGGCACTTGTTTCTTTTAATCTTCCAATATCAAAAGGAAATAAAATCCAT
TGTTTAGATATTTTACATGCATTAGTCAAGCATGTTTTAGGTCACGTAGATGAAAGTGAT
ACATTTAAACAATTGCAAGATTCTATGGATGTAAAGTTTAAAAAACAATTTCCAACAAGG
AAAGAAATAGAAATAGTCTCATCTACAAGAATTTGGAAGCGCCAAGAACGTGCAGCAAAA
ACGATTCAGACTGCATGGAGGGAATACTTGAGGTTAAAAAGAGAAAGAGAACGTTCACCG
ATGTCAGGCGATGACGATCAAACTCAAACTTCTAGTCCTGGTTGGCATACCAAATTATCT
GCTCTTAATTTTCTTCATTTACAAATTCATCGTCGTTGCTCACGCACTTCAAGTCGTTGC
TCAAGTCGAAAATCATCACGGGCATCAGGAGATTCAGATATGAGTGAACTTGCAGGACCA
TGGCTAAATTTACCAATTCTTGTAGCCGGTACAACGGATCTTGTTAAAAACACTGATTCT
GATGTTAAAAAAGATTTAGCTGCACCACCAGAAGGCAAGCCAACACGTAGAAAAAGTATA
TATAATTTCTTATTGGGTAGGCAGGACGCAGTTGATGACCACCTCACTTCTCCATCTGTA
CACAAAAAGATAATAAAGCCAAATGAAACATCTGATACCAAAGAAGCTCTCACTTCGCCA
CCATCAAAGAATAAACGTGCATCTAGTTTCATAAAAAAGAAACCACGGTTAGAGCGAGGT
CTTTCAGATCATAGTGTGTTACGACTCAACAAAAATGCAAATTTAGATGTGAGCATCTTG
GTCACTGAAGCCTCACCAAATGAAGAATCATGTTCTGGACCAAATATTTCCTCCAATCAA
ACTCTTATTCATCATGTGATTGTGCATCGTGAGAGTGAAGAATATCATGATCTTGATGAA
GTAGTTGTTGATGATAAATCAAGTACAATTAAATCAACTGAATTAGTGTCTACATCGATG
AAAAATGAAACAATTAATCATCCGATTGTGAAAATTTGTGTAGACTCGCCAAAAGAGGAA
GAACAAAAATCACTTGCTCAAACACCGGATGTAGAAAGAATTATTTTGGAGAGATCATCT
CTTGCAGCCGAAATCTCGGAAAGTTCAAATGTTAATGTAGACGAGCCAATAGATATAAAC
CTTGCAAATACGTGCGATACTTCGAAAGTGATTTATGACTATTAA

>g6732.t2 Gene=g6732 Length=2254
MSETIEEAEFFFLAIYTIEMCIKIIAKGFVLNKYTYLRNPWNWLDFLVIASGYATIGLDV
GNLAGLRTFRVLRALKTVSIMPGLKTIINALLHSFKQLAEVMTLTIFCLMVFALFALQVY
MGELRNKCVQNHPEWWTNVTDEEWYGWISNSSNWVYMDDDMPMLCGNLTGAQHCEKGYTC
LCVGENPNHGYTNFDNFMWSMLTTFQLITLDYWENTYNMILATCGPMSVSFFTIVVFFGS
FYLINLMLAVVALSYEEEAEITQEERRKDLIDHRDDSTFSFDPTNLNLKQLSKQASKKFD
SKRNILMASYSRKKTRRRKKGKEGKAQNNNSNINTNSGNVNNKLNSGGNNNENIDDNNKS
NDDIIKSRSATPSSNPSPRHSTIVIKPPQTLALSKTRGLLQQAQLNQLQQQCNVGTNEET
ENSNTLHPLRGQMSSRQASSNRDSSLDDSGVVDDHEDNNDNQEQEVENVHQSSNMEVTLA
LSPKEVKIVKCNGNNLSRNKKKHDVYALHPDYLSQSIVVIDDFPDDRNCECCIHCCFNYD
SWLSFQNILYQIVKDPLFELFITLCIVLNTTFLALEHHGMSETVRSVLDIGNKVFTLIFT
LECILKVLSLSKEFFMCGWNIFDLCIVTASILDLIFELVDGLSVLRGLRLLRVLKLAQSW
VTMRVLLSIILSTIGALGNLTFILVIVIYIFAVIGMQLFGKDYTKEKFYPDPVPRWNFND
FFHSFMMIFRILCGEWIEPLWDCLRAEEASGSKSSCFAIFLPALVMGNFMVLNLFLALLL
NSFNSEELKSRKEEVGDESRLAKSFERLRSIVRKGRLQRDNSSEKGETKLEKLVHEIVLK
QKQAELKNKGILSDSSKKQQQYPLRENRSSPPLPIYSKSYQESLNRPISSTCDIQEINLN
NVNTISGSQETVTEIDELQLPDDRKRNKFNFNNNESNNNNNNNNNNGILHQMSSGFGTQQ
SKDEPLDFNEAVELRTLGQFNTTSNSNITKGLPQQTQMRQSCPLPRQHYNSQAHAIDTNS
NSSSCTYSEISKQLKRLSSNQSINTLSLDQDEFLNHLNHINLKDELLNCDKKELFQFLRD
EKLFDSFYNEPVSSEPPQPNEVRKSVHIQEDIELFKSPERQLRDCEKLPSVTKMSEIDQS
TGKPWQCLVSYVDDLTVGGRRNSQGGYDDPNFLGYGRNKTPKIPQDCFPRKCYERCPCWD
EWIKSKAGQKWMKIRTSVLQVVDTPTFEWIILFLIFASSITLCFEDIHLDKNKDLKRILY
WTNLFFCIIFVVEMLMKWVAHGFTKYFSSFWTILDFTIVFVSVFSLLIEENENLKVLRSL
RTLRALRPLRAISRWQGMRIVVNALMYAIPSIFNVLLVCLVFWLIFSIMGVQFFGGKFFK
CVDEDGEILPISVVNDRWQCMNLNYTWINSKITFDHVGMGYLALFQIATFEGWMEVMADA
VDSRGVDLQPSREASLYAYIYFVIFIICGSFFTLNLFIGVIIDNFNMLKKKYEGGILEMF
LTPSQKSYYCAMKKLGRKKPQKVIKRPLNQILAMFYDLANSRRFEIAIFVLIFLNMLSMG
IEHYDQPHAVFFILEVSNAFFTTVFGLECIVKIIGLRYHYFTVPWNMFDFLLVLASIFGI
LMEDIMIDLPISPTLLRVVRVFRIGRILRLIKAAKGIRKLLFALVVSLPALFNIGALLAL
LLFVYAILGMSLFGHVKKQGALSQMVNFETFGSSMQLLFRLMTSAGWNDVLESLMIQPPD
CDIHLETSSNGDCGHPLLAITYFTSFIIISYMIVINMYIAIILENFNQAHQEEEVGIVED
DLEMFYIRWSKYDPHASQFISFSQLSDFIASLDPPLGIPKPNTVALVSFNLPISKGNKIH
CLDILHALVKHVLGHVDESDTFKQLQDSMDVKFKKQFPTRKEIEIVSSTRIWKRQERAAK
TIQTAWREYLRLKRERERSPMSGDDDQTQTSSPGWHTKLSALNFLHLQIHRRCSRTSSRC
SSRKSSRASGDSDMSELAGPWLNLPILVAGTTDLVKNTDSDVKKDLAAPPEGKPTRRKSI
YNFLLGRQDAVDDHLTSPSVHKKIIKPNETSDTKEALTSPPSKNKRASSFIKKKPRLERG
LSDHSVLRLNKNANLDVSILVTEASPNEESCSGPNISSNQTLIHHVIVHRESEEYHDLDE
VVVDDKSSTIKSTELVSTSMKNETINHPIVKICVDSPKEEEQKSLAQTPDVERIILERSS
LAAEISESSNVNVDEPIDINLANTCDTSKVIYDY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
69 g6732.t2 CDD cd13433 Na_channel_gate 1483 1537 6.10574E-25
23 g6732.t2 Coils Coil Coil 452 472 -
20 g6732.t2 Gene3D G3DSA:1.20.120.350 - 1 82 4.1E-17
14 g6732.t2 Gene3D G3DSA:1.10.287.70 - 167 259 7.5E-12
18 g6732.t2 Gene3D G3DSA:1.20.120.350 - 547 665 1.5E-30
16 g6732.t2 Gene3D G3DSA:1.10.287.70 - 666 788 1.1E-18
21 g6732.t2 Gene3D G3DSA:1.20.120.350 - 1215 1335 5.4E-29
17 g6732.t2 Gene3D G3DSA:1.10.287.70 - 1337 1484 1.5E-24
19 g6732.t2 Gene3D G3DSA:1.20.120.350 - 1532 1654 1.6E-33
15 g6732.t2 Gene3D G3DSA:1.10.287.70 - 1656 1788 5.1E-22
22 g6732.t2 Gene3D G3DSA:1.10.238.10 - 1789 1909 1.1E-42
89 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 310 357 -
92 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 326 355 -
86 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 414 452 -
88 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 414 446 -
90 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 849 873 -
91 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 1976 1995 -
93 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 2060 2095 -
87 g6732.t2 MobiDBLite mobidb-lite consensus disorder prediction 2071 2086 -
6 g6732.t2 PANTHER PTHR10037 VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM 3 2089 0.0
7 g6732.t2 PANTHER PTHR10037:SF62 SODIUM CHANNEL PROTEIN 60E 3 2089 0.0
9 g6732.t2 PRINTS PR00170 Voltage-gated Na+ channel alpha subunit signature 1765 1784 3.4E-9
8 g6732.t2 PRINTS PR00170 Voltage-gated Na+ channel alpha subunit signature 1800 1813 3.4E-9
1 g6732.t2 Pfam PF00520 Ion transport protein 8 260 1.1E-58
2 g6732.t2 Pfam PF00520 Ion transport protein 556 787 1.0E-48
3 g6732.t2 Pfam PF00520 Ion transport protein 1225 1491 8.2E-64
4 g6732.t2 Pfam PF00520 Ion transport protein 1543 1793 1.7E-51
5 g6732.t2 Pfam PF16905 Voltage-dependent L-type calcium channel, IQ-associated 1805 1840 1.1E-6
24 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
67 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 31 -
42 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 42 -
57 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 43 66 -
35 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 67 77 -
51 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 78 95 -
39 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 96 100 -
58 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 121 -
29 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 228 -
62 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 229 255 -
37 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 256 556 -
61 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 557 575 -
26 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 576 586 -
63 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 587 609 -
43 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 610 620 -
54 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 621 645 -
30 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 646 664 -
64 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 665 698 -
40 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 699 717 -
60 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 718 737 -
27 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 738 756 -
55 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 757 780 -
46 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 781 1228 -
50 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1229 1247 -
31 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1248 1258 -
49 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1259 1280 -
38 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1281 1285 -
47 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1286 1308 -
32 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1309 1339 -
65 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1340 1366 -
44 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1367 1457 -
53 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1458 1482 -
33 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1483 1543 -
48 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1544 1564 -
36 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1565 1569 -
56 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1570 1591 -
34 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1592 1602 -
68 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1603 1621 -
41 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1622 1626 -
66 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1627 1648 -
28 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1649 1659 -
59 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1660 1688 -
45 g6732.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1689 1758 -
52 g6732.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1759 1783 -
25 g6732.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1784 2254 -
13 g6732.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 7 257 3.69E-23
12 g6732.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 556 784 2.43E-29
10 g6732.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 1224 1486 2.04E-36
11 g6732.t2 SUPERFAMILY SSF81324 Voltage-gated potassium channels 1541 1789 1.57E-32
85 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -
81 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -
80 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 98 120 -
75 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 251 -
82 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 673 695 -
72 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 757 779 -
78 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1225 1244 -
84 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1257 1276 -
71 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1286 1308 -
77 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1344 1366 -
74 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1460 1482 -
73 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1544 1561 -
79 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1571 1593 -
70 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1600 1622 -
83 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1674 1696 -
76 g6732.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1757 1779 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0006811 ion transport BP
GO:0005261 cation channel activity MF
GO:0005216 ion channel activity MF
GO:0001518 voltage-gated sodium channel complex CC
GO:0005248 voltage-gated sodium channel activity MF
GO:0005886 plasma membrane CC
GO:0006814 sodium ion transport BP

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values