Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t11 TTS g674.t11 5209165 5209165
chr_3 g674 g674.t11 isoform g674.t11 5209193 5211200
chr_3 g674 g674.t11 exon g674.t11.exon1 5209193 5209249
chr_3 g674 g674.t11 cds g674.t11.CDS1 5209246 5209249
chr_3 g674 g674.t11 exon g674.t11.exon2 5210021 5210239
chr_3 g674 g674.t11 cds g674.t11.CDS2 5210021 5210239
chr_3 g674 g674.t11 exon g674.t11.exon3 5210295 5210901
chr_3 g674 g674.t11 cds g674.t11.CDS3 5210295 5210901
chr_3 g674 g674.t11 exon g674.t11.exon4 5210985 5211074
chr_3 g674 g674.t11 cds g674.t11.CDS4 5210985 5211063
chr_3 g674 g674.t11 exon g674.t11.exon5 5211139 5211200
chr_3 g674 g674.t11 TSS g674.t11 5211298 5211298

Sequences

>g674.t11 Gene=g674 Length=1035
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGGATAT
CTCCACTTGTACATTATTCCATTGTTTGCAATATGAAGATCGACCTTACTGGTGGGTCAA
TGAAACAAAAGCTTACACATCACTCACCCGACCAATATTATATCAAACTGAAAGAACTTG
TGAGACATCGGGTGGATCACCATCAGGTCATTCGATGATTGCTGCATGTTTTCTATACAT
CATCTATGACGAAATCAACCGACAAATCGACAATCGTCCTTCAATGTCGCACAAAGTCAT
ACTGAAAATTCTAAACAAAATTGGACTGACTTTTATACTTACAATTACTGCCATATCGAG
AATGTACTTTGCTGCACATTTTTTGCATCAATGTATTTTAGGTTTCATGCTTGGACTTTT
AGTAGCAAATTTAATGGCAAATCATGGATTGGCTGAAAAATTTTCGAGTTTTGAAAAACG
AACTTGGATGACAATAATTGCTTGGATGATAATTTTGGTAGTGTCAATTTATTGGGCCCA
TAAATTAATTAGTGGAAATCCAATGAAAACAGTAGAATTGGCATTCAAACATTGCAAAGA
TCCACTCTATCCTAAGCCTGAAACTACTGTCGTTTTTTCTGCTCTCCGATGCATTGCGAT
GTCTTGTGGAATTTTGTTAAATGCACCAATTTACAAAAGAGAGTCAAAATTGAAATTCTT
TGAATCAGCAGTAATGACAATATGTTTAATTATTCTTCAATTCTGTGCAATTTATGAAAC
ACCAAAGAATTACAAAATTATCATTTTCTATAGTTATTCATTTATTATTTATGCATTTTT
CCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCAACAATAACTAATGAAAATTCTCA
AGAAAAAGTCAAAAATCATTAAATGTTTAACGTATTTATAGAAAAATTCAAATAAAACCA
TATAAATGTTAAAAA

>g674.t11 Gene=g674 Length=302
MKNFSDIFQHFLVRDISTCTLFHCLQYEDRPYWWVNETKAYTSLTRPILYQTERTCETSG
GSPSGHSMIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFA
AHFLHQCILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLIS
GNPMKTVELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAV
MTICLIILQFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVK
NH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g674.t11 Gene3D G3DSA:1.20.144.10 - 14 160 1.0E-11
2 g674.t11 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 21 298 1.1E-51
1 g674.t11 Pfam PF01569 PAP2 superfamily 28 141 7.8E-16
14 g674.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 59 -
20 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 60 78 -
12 g674.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 79 98 -
22 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 99 117 -
15 g674.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 118 122 -
24 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 146 -
11 g674.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 147 157 -
19 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 158 176 -
17 g674.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 177 205 -
23 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 206 227 -
10 g674.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 228 238 -
21 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 239 257 -
16 g674.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 258 262 -
18 g674.t11 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 263 284 -
13 g674.t11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 285 302 -
8 g674.t11 SMART SM00014 acid_phosph_2 21 142 6.7E-5
7 g674.t11 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 37 141 1.26E-9
6 g674.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -
4 g674.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 157 176 -
3 g674.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 235 257 -
5 g674.t11 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 262 284 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values