Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t14 TTS g674.t14 5209165 5209165
chr_3 g674 g674.t14 isoform g674.t14 5209193 5211200
chr_3 g674 g674.t14 exon g674.t14.exon1 5209193 5209258
chr_3 g674 g674.t14 cds g674.t14.CDS1 5209256 5209258
chr_3 g674 g674.t14 exon g674.t14.exon2 5210032 5210239
chr_3 g674 g674.t14 cds g674.t14.CDS2 5210032 5210239
chr_3 g674 g674.t14 exon g674.t14.exon3 5210295 5211074
chr_3 g674 g674.t14 cds g674.t14.CDS3 5210295 5211074
chr_3 g674 g674.t14 exon g674.t14.exon4 5211139 5211200
chr_3 g674 g674.t14 cds g674.t14.CDS4 5211139 5211200
chr_3 g674 g674.t14 TSS g674.t14 5211298 5211298

Sequences

>g674.t14 Gene=g674 Length=1116
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGGATAT
CTCCACTTGTACATTATTCCATTGTTTGCAATGTACAACACAAAAGTTTATCATCGTTTA
TTGATTTCATGCATTGCGACTGATTTTATTAATCTCATTATAAAATGGATTTTAGATGAA
GATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGACCAATA
TTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATTCGATG
ATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACAATCGT
CCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTTTTATA
CTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAATGTATT
TTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGGCTGAA
AAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAATTTTG
GTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAGTAGAA
TTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCGTTTTT
TCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTTACAAA
AGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTATTCTT
CAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAGTTAT
TCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCA
ACAATAACTAATGAAAATTCTCAAGAAAAATAAAAATAATTAAATGTTTAACGTATTTAT
AGAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t14 Gene=g674 Length=350
MEIIDSLWKIEIDLIIKIQNKFFKYEEFLGYFSTFFGSGYLHLYIIPLFAMYNTKVYHRL
LISCIATDFINLIIKWILDEDRPYWWVNETKAYTSLTRPILYQTERTCETSGGSPSGHSM
IAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQCI
LGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTVE
LAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLIIL
QFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g674.t14 Gene3D G3DSA:1.20.144.10 - 3 208 6.0E-14
2 g674.t14 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 4 347 5.0E-67
3 g674.t14 PANTHER PTHR12591:SF0 FI19814P1 4 347 5.0E-67
25 g674.t14 PIRSF PIRSF000905 G6Pase 4 350 2.4E-51
1 g674.t14 Pfam PF01569 PAP2 superfamily 60 194 1.6E-20
12 g674.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 27 -
19 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 28 48 -
6 g674.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 49 59 -
21 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 60 78 -
13 g674.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 79 111 -
24 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 130 -
9 g674.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 131 150 -
20 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 169 -
11 g674.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 170 174 -
22 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 175 198 -
8 g674.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 199 209 -
17 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 210 228 -
14 g674.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 229 257 -
23 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 258 279 -
10 g674.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 280 290 -
16 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 291 309 -
15 g674.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 310 314 -
18 g674.t14 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 315 336 -
7 g674.t14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 337 350 -
32 g674.t14 SMART SM00014 acid_phosph_2 55 194 2.6E-15
4 g674.t14 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 28 193 1.05E-14
27 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
31 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
29 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 172 194 -
28 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 209 228 -
26 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 287 309 -
30 g674.t14 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 314 336 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004346 glucose-6-phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed