Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t16 TTS g674.t16 5209165 5209165
chr_3 g674 g674.t16 isoform g674.t16 5209193 5211200
chr_3 g674 g674.t16 exon g674.t16.exon1 5209193 5209249
chr_3 g674 g674.t16 cds g674.t16.CDS1 5209246 5209249
chr_3 g674 g674.t16 exon g674.t16.exon2 5210021 5210239
chr_3 g674 g674.t16 cds g674.t16.CDS2 5210021 5210239
chr_3 g674 g674.t16 exon g674.t16.exon3 5210295 5210908
chr_3 g674 g674.t16 cds g674.t16.CDS3 5210295 5210779
chr_3 g674 g674.t16 exon g674.t16.exon4 5211139 5211200
chr_3 g674 g674.t16 TSS g674.t16 5211298 5211298

Sequences

>g674.t16 Gene=g674 Length=952
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAATTTTAGATGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCAC
TCACCCGACCAATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCAT
CAGGTCATTCGATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGAC
AAATCGACAATCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTG
GACTGACTTTTATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTT
TGCATCAATGTATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATC
ATGGATTGGCTGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTT
GGATGATAATTTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAA
TGAAAACAGTAGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAA
CTACTGTCGTTTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATG
CACCAATTTACAAAAGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATAT
GTTTAATTATTCTTCAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCA
TTTTCTATAGTTATTCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTG
TTCCAAAAATTGCAACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCATTAAA
TGTTTAACGTATTTATAGAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t16 Gene=g674 Length=235
MIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQC
ILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTV
ELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLII
LQFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVKNH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g674.t16 Gene3D G3DSA:1.20.144.10 - 1 90 1.8E-5
2 g674.t16 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 1 231 7.8E-29
1 g674.t16 Pfam PF01569 PAP2 superfamily 3 75 7.5E-8
11 g674.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
20 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
14 g674.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 55 -
15 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 56 79 -
9 g674.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
18 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
13 g674.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 138 -
16 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 160 -
8 g674.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 171 -
17 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 190 -
12 g674.t16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 195 -
19 g674.t16 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 196 217 -
10 g674.t16 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 218 235 -
6 g674.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
4 g674.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
5 g674.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -
3 g674.t16 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 195 217 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values