Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t20 TTS g674.t20 5209165 5209165
chr_3 g674 g674.t20 isoform g674.t20 5209193 5211200
chr_3 g674 g674.t20 exon g674.t20.exon1 5209193 5209254
chr_3 g674 g674.t20 exon g674.t20.exon2 5210021 5211200
chr_3 g674 g674.t20 cds g674.t20.CDS1 5210291 5211109
chr_3 g674 g674.t20 TSS g674.t20 5211298 5211298

Sequences

>g674.t20 Gene=g674 Length=1242
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTAAGTTTTCCAAAGAATTTCATAAATTTATGAAAAATTTCCATGAAAAAAATTTCCC
TTTCAGGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGG
ATATCTCCACTTGTACATTATTCCATTGTTTGCAATGTACAACACAAAAGTTTATCATCG
TTTATTGATTTCATGCATTGCGACTGATTTTATTAATCTCATTATAAAATGGATTTTAGA
TGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGACC
AATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATTC
GATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACAA
TCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTTT
TATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAATG
TATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGGC
TGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAAT
TTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAGT
AGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCGT
TTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTTA
CAAAAGGTAAGAAATTGTCTAAAATTTCATAAAACTTTTAATATTTTCTTCATCATTTTA
GAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTATTCTTC
AATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAGTTATT
CATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCAA
CAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCAAATAATTAAATGTTTAACGT
ATTTATAGAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t20 Gene=g674 Length=272
MKNFHEKNFPFRFFKYEEFLGYFSTFFGSGYLHLYIIPLFAMYNTKVYHRLLISCIATDF
INLIIKWILDEDRPYWWVNETKAYTSLTRPILYQTERTCETSGGSPSGHSMIAACFLYII
YDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQCILGFMLGLLV
ANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTVELAFKHCKDP
LYPKPETTVVFSALRCIAMSCGILLNAPIYKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g674.t20 Gene3D G3DSA:1.20.144.10 - 9 200 4.0E-14
2 g674.t20 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 12 265 6.1E-58
3 g674.t20 PANTHER PTHR12591:SF0 FI19814P1 12 265 6.1E-58
1 g674.t20 Pfam PF01569 PAP2 superfamily 51 185 8.1E-21
19 g674.t20 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
25 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 43 -
15 g674.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 49 -
23 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 50 69 -
20 g674.t20 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 70 102 -
27 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 103 121 -
13 g674.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 141 -
21 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 160 -
18 g674.t20 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 161 165 -
22 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 166 189 -
14 g674.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 190 200 -
24 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 201 219 -
17 g674.t20 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 220 248 -
26 g674.t20 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 270 -
16 g674.t20 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 271 272 -
11 g674.t20 SMART SM00014 acid_phosph_2 46 185 2.6E-15
10 g674.t20 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 22 184 1.13E-14
5 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
8 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 47 69 -
6 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 157 -
4 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 167 189 -
7 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 201 218 -
9 g674.t20 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 248 270 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed