Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t21 TTS g674.t21 5209165 5209165
chr_3 g674 g674.t21 isoform g674.t21 5209193 5211200
chr_3 g674 g674.t21 exon g674.t21.exon1 5209193 5209255
chr_3 g674 g674.t21 cds g674.t21.CDS1 5209246 5209255
chr_3 g674 g674.t21 exon g674.t21.exon2 5210021 5210239
chr_3 g674 g674.t21 cds g674.t21.CDS2 5210021 5210239
chr_3 g674 g674.t21 exon g674.t21.exon3 5210295 5210901
chr_3 g674 g674.t21 cds g674.t21.CDS3 5210295 5210779
chr_3 g674 g674.t21 exon g674.t21.exon4 5211139 5211200
chr_3 g674 g674.t21 TSS g674.t21 5211298 5211298

Sequences

>g674.t21 Gene=g674 Length=951
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAATGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCG
ACCAATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCA
TTCGATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGA
CAATCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGAC
TTTTATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCA
ATGTATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATT
GGCTGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGAT
AATTTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAAC
AGTAGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGT
CGTTTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAAT
TTACAAAAGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAAT
TATTCTTCAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTA
TAGTTATTCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAA
AATTGCAACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCAAAATAATTAAAT
GTTTAACGTATTTATAGAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t21 Gene=g674 Length=237
MIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQC
ILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTV
ELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLII
LQFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVKNQNN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g674.t21 Gene3D G3DSA:1.20.144.10 - 1 90 1.7E-5
2 g674.t21 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 1 229 7.0E-29
3 g674.t21 PANTHER PTHR12591:SF0 FI19814P1 1 229 7.0E-29
1 g674.t21 Pfam PF01569 PAP2 superfamily 3 75 7.6E-8
12 g674.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
21 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
15 g674.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 55 -
16 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 56 79 -
11 g674.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
19 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
14 g674.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 138 -
17 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 160 -
10 g674.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 171 -
18 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 190 -
13 g674.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 195 -
20 g674.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 196 217 -
9 g674.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 218 237 -
7 g674.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
5 g674.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
6 g674.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -
4 g674.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 195 217 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed