Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t24 TTS g674.t24 5209165 5209165
chr_3 g674 g674.t24 isoform g674.t24 5209193 5211200
chr_3 g674 g674.t24 exon g674.t24.exon1 5209193 5209257
chr_3 g674 g674.t24 cds g674.t24.CDS1 5209246 5209257
chr_3 g674 g674.t24 exon g674.t24.exon2 5210032 5210239
chr_3 g674 g674.t24 cds g674.t24.CDS2 5210032 5210239
chr_3 g674 g674.t24 exon g674.t24.exon3 5210295 5211074
chr_3 g674 g674.t24 cds g674.t24.CDS3 5210295 5211074
chr_3 g674 g674.t24 exon g674.t24.exon4 5211139 5211200
chr_3 g674 g674.t24 cds g674.t24.CDS4 5211139 5211200
chr_3 g674 g674.t24 TSS g674.t24 5211298 5211298

Sequences

>g674.t24 Gene=g674 Length=1115
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGGATAT
CTCCACTTGTACATTATTCCATTGTTTGCAATGTACAACACAAAAGTTTATCATCGTTTA
TTGATTTCATGCATTGCGACTGATTTTATTAATCTCATTATAAAATGGATTTTAGATGAA
GATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGACCAATA
TTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATTCGATG
ATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACAATCGT
CCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTTTTATA
CTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAATGTATT
TTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGGCTGAA
AAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAATTTTG
GTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAGTAGAA
TTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCGTTTTT
TCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTTACAAA
AGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTATTCTT
CAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAGTTAT
TCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCA
ACAATAACTAATGAAAATTCTCAAGAAAAAAAAAATAATTAAATGTTTAACGTATTTATA
GAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t24 Gene=g674 Length=353
MEIIDSLWKIEIDLIIKIQNKFFKYEEFLGYFSTFFGSGYLHLYIIPLFAMYNTKVYHRL
LISCIATDFINLIIKWILDEDRPYWWVNETKAYTSLTRPILYQTERTCETSGGSPSGHSM
IAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQCI
LGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTVE
LAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLIIL
QFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKKNN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g674.t24 Coils Coil Coil 345 353 -
5 g674.t24 Gene3D G3DSA:1.20.144.10 - 3 208 6.1E-14
2 g674.t24 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 4 348 2.3E-67
3 g674.t24 PANTHER PTHR12591:SF0 FI19814P1 4 348 2.3E-67
26 g674.t24 PIRSF PIRSF000905 G6Pase 4 352 9.1E-52
1 g674.t24 Pfam PF01569 PAP2 superfamily 60 194 1.6E-20
13 g674.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 27 -
20 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 28 48 -
7 g674.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 49 59 -
22 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 60 78 -
14 g674.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 79 111 -
25 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 130 -
9 g674.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 131 150 -
21 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 169 -
12 g674.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 170 174 -
23 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 175 198 -
8 g674.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 199 209 -
18 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 210 228 -
15 g674.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 229 257 -
24 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 258 279 -
10 g674.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 280 290 -
17 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 291 309 -
16 g674.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 310 314 -
19 g674.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 315 336 -
11 g674.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 337 353 -
33 g674.t24 SMART SM00014 acid_phosph_2 55 194 2.6E-15
4 g674.t24 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 28 193 1.07E-14
28 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
32 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
30 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 172 194 -
29 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 209 228 -
27 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 287 309 -
31 g674.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 314 336 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004346 glucose-6-phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed