General information for g674.t38
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucose-6-phosphatase.
Parent gene
- The parent gene g674 is located on chr_3: 5210514..5211200 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g674 | g674.t38 | TTS | g674.t38 | 5209165 | 5209165 |
| chr_3 | g674 | g674.t38 | isoform | g674.t38 | 5209193 | 5211200 |
| chr_3 | g674 | g674.t38 | exon | g674.t38.exon1 | 5209193 | 5210235 |
| chr_3 | g674 | g674.t38 | cds | g674.t38.CDS1 | 5210226 | 5210235 |
| chr_3 | g674 | g674.t38 | exon | g674.t38.exon2 | 5210295 | 5211200 |
| chr_3 | g674 | g674.t38 | cds | g674.t38.CDS2 | 5210295 | 5211109 |
| chr_3 | g674 | g674.t38 | TSS | g674.t38 | 5211298 | 5211298 |
Sequences
>g674.t38 Gene=g674 Length=1949
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTAAGTTTTCCAAAGAATTTCATAAATTTATGAAAAATTTCCATGAAAAAAATTTCCC
TTTCAGGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGG
ATATCTCCACTTGTACATTATTCCATTGTTTGCAATGTACAACACAAAAGTTTATCATCG
TTTATTGATTTCATGCATTGCGACTGATTTTATTAATCTCATTATAAAATGGATTTTAGA
TGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGACC
AATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATTC
GATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACAA
TCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTTT
TATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAATG
TATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGGC
TGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAAT
TTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAGT
AGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCGT
TTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTTA
CAAAAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTATTCTT
CAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAGTTAT
TCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCA
ACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCAGTAATATTAACCGTCAGTG
ACGTGTTAAAAGCGCATTTTCCCGCAACAGATTAGTTTTGTTTAAAAATTTATTGAAAGT
TTCAAAAAAATTTATTCCGGCCTTTTTGAAGTCTGTACAATTTAAAACATACACTTGGGT
CCAAATGTCCAAAAATCACTTCTGACATGTTTTTCTCGACGTTTTATGACATTTTAAGAC
TTTTTGGTGAAAACAATTTTTTTGGTCCATGTGATGGACATCCACCACATGCATGCCCTT
GGGTCACCACCAATCTATAAACTTTTTATGCCATCTTATTCTACGCTTCAAGACCTTTCC
AACGAGTATAAATATGTCTGTATTTGAAAAATTTCGATTTTTGGTCCATGTGATGCACCT
GTGCGGCACATGCATACACTTGGAATAAAATGTCCAAAAATCATTTTTGACTTGTATTCT
CGATGTTTTATGATATTATAAGATTTTTTGGTGAAAAAAAGTTTTTTTGGTCCATGTGGT
GGACGTCCACCATATGCATGCCATAGCTCGGCATGGAGAACGAATCTCGCGGAAAGCTTC
CGTTACACCGGTCTCATAGTCAGAACCAACAGATTGGTGCAAAAAGTTTTGAGAGAAAAA
CCGTTTTTTGAAAGACTAGTTACGGAGACAGACAGACAGACAGACAGACAGACGGACAGA
CGGACAGACGGACAGACGGACAGACGGACAGACAAAAAGTGGGGACAATAGCGCCTTTTT
TCTAAATCTGATGGAAAATGCGCTAAAAATAATTAAATGTTTAACGTATTTATAGAAAAA
TTCAAATAAAACCATATAAATGTTAAAAA
>g674.t38 Gene=g674 Length=274
MKNFHEKNFPFRFFKYEEFLGYFSTFFGSGYLHLYIIPLFAMYNTKVYHRLLISCIATDF
INLIIKWILDEDRPYWWVNETKAYTSLTRPILYQTERTCETSGGSPSGHSMIAACFLYII
YDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQCILGFMLGLLV
ANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTVELAFKHCKDP
LYPKPETTVVFSALRCIAMSCGILLNAPIYKSQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g674.t38 | Gene3D | G3DSA:1.20.144.10 | - | 9 | 200 | 4.2E-14 |
| 2 | g674.t38 | PANTHER | PTHR12591 | GLUCOSE-6-PHOSPHATASE | 12 | 266 | 4.5E-58 |
| 3 | g674.t38 | PANTHER | PTHR12591:SF0 | FI19814P1 | 12 | 266 | 4.5E-58 |
| 1 | g674.t38 | Pfam | PF01569 | PAP2 superfamily | 51 | 185 | 8.3E-21 |
| 19 | g674.t38 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 25 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 43 | - |
| 16 | g674.t38 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 44 | 49 | - |
| 23 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 50 | 69 | - |
| 20 | g674.t38 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 70 | 102 | - |
| 27 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 121 | - |
| 13 | g674.t38 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 122 | 141 | - |
| 21 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 160 | - |
| 18 | g674.t38 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 161 | 165 | - |
| 22 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 166 | 189 | - |
| 15 | g674.t38 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 190 | 200 | - |
| 24 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 219 | - |
| 17 | g674.t38 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 220 | 248 | - |
| 26 | g674.t38 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 249 | 270 | - |
| 14 | g674.t38 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 271 | 274 | - |
| 11 | g674.t38 | SMART | SM00014 | acid_phosph_2 | 46 | 185 | 2.6E-15 |
| 10 | g674.t38 | SUPERFAMILY | SSF48317 | Acid phosphatase/Vanadium-dependent haloperoxidase | 22 | 184 | 1.14E-14 |
| 5 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
| 8 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 6 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 157 | - |
| 4 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 167 | 189 | - |
| 7 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 218 | - |
| 9 | g674.t38 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 270 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
