Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t46 TTS g674.t46 5209165 5209165
chr_3 g674 g674.t46 isoform g674.t46 5210017 5211200
chr_3 g674 g674.t46 exon g674.t46.exon1 5210017 5210239
chr_3 g674 g674.t46 cds g674.t46.CDS1 5210017 5210239
chr_3 g674 g674.t46 exon g674.t46.exon2 5210295 5210901
chr_3 g674 g674.t46 cds g674.t46.CDS2 5210295 5210779
chr_3 g674 g674.t46 exon g674.t46.exon3 5211135 5211200
chr_3 g674 g674.t46 TSS g674.t46 5211298 5211298

Sequences

>g674.t46 Gene=g674 Length=896
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTAAATGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCA
CCCGACCAATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAG
GTCATTCGATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAA
TCGACAATCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGAC
TGACTTTTATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGC
ATCAATGTATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATG
GATTGGCTGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGA
TGATAATTTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGA
AAACAGTAGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTA
CTGTCGTTTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCAC
CAATTTACAAAAGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTT
TAATTATTCTTCAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTT
TCTATAGTTATTCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTC
CAAAAATTGCAACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCAGTAA

>g674.t46 Gene=g674 Length=235
MIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQC
ILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTV
ELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLII
LQFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVKNQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g674.t46 Gene3D G3DSA:1.20.144.10 - 1 90 1.8E-5
2 g674.t46 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 1 231 7.8E-29
1 g674.t46 Pfam PF01569 PAP2 superfamily 3 75 7.5E-8
11 g674.t46 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
20 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
14 g674.t46 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 55 -
15 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 56 79 -
9 g674.t46 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
18 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
13 g674.t46 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 138 -
16 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 160 -
8 g674.t46 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 171 -
17 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 190 -
12 g674.t46 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 195 -
19 g674.t46 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 196 217 -
10 g674.t46 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 218 235 -
6 g674.t46 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
4 g674.t46 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
5 g674.t46 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -
3 g674.t46 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 195 217 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed