Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t50 TTS g674.t50 5209165 5209165
chr_3 g674 g674.t50 isoform g674.t50 5210055 5210901
chr_3 g674 g674.t50 exon g674.t50.exon1 5210055 5210901
chr_3 g674 g674.t50 cds g674.t50.CDS1 5210291 5210779
chr_3 g674 g674.t50 TSS g674.t50 5211298 5211298

Sequences

>g674.t50 Gene=g674 Length=847
ATGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGAC
CAATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATT
CGATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACA
ATCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTT
TTATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAAT
GTATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGG
CTGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAA
TTTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAG
TAGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCG
TTTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTT
ACAAAAGGTAAGAAATTGTCTAAAATTTCATAAAACTTTTAATATTTTCTTCATCATTTT
AGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTATTCTT
CAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAGTTAT
TCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAATTGCA
ACAATAA

>g674.t50 Gene=g674 Length=162
MIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQC
ILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTV
ELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g674.t50 Gene3D G3DSA:1.20.144.10 - 1 90 7.4E-6
2 g674.t50 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 1 155 1.9E-23
3 g674.t50 PANTHER PTHR12591:SF0 FI19814P1 1 155 1.9E-23
1 g674.t50 Pfam PF01569 PAP2 superfamily 3 75 3.3E-8
11 g674.t50 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
17 g674.t50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
13 g674.t50 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 55 -
14 g674.t50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 56 79 -
10 g674.t50 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
16 g674.t50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
12 g674.t50 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 138 -
15 g674.t50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 160 -
9 g674.t50 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 162 -
5 g674.t50 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 28 47 -
7 g674.t50 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 57 79 -
6 g674.t50 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 91 108 -
4 g674.t50 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 160 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values