Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t6 TTS g674.t6 5209165 5209165
chr_3 g674 g674.t6 isoform g674.t6 5209193 5210901
chr_3 g674 g674.t6 exon g674.t6.exon1 5209193 5209252
chr_3 g674 g674.t6 cds g674.t6.CDS1 5209246 5209252
chr_3 g674 g674.t6 exon g674.t6.exon2 5210021 5210239
chr_3 g674 g674.t6 cds g674.t6.CDS2 5210021 5210239
chr_3 g674 g674.t6 exon g674.t6.exon3 5210295 5210901
chr_3 g674 g674.t6 cds g674.t6.CDS3 5210295 5210779
chr_3 g674 g674.t6 TSS g674.t6 5211298 5211298

Sequences

>g674.t6 Gene=g674 Length=886
ATGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGAC
CAATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATT
CGATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACA
ATCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTT
TTATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAAT
GTATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGG
CTGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAA
TTTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAG
TAGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCG
TTTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTT
ACAAAAGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTA
TTCTTCAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATA
GTTATTCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAA
TTGCAACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCATAATTAAATGTTTA
ACGTATTTATAGAAAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t6 Gene=g674 Length=236
MIAACFLYIIYDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQC
ILGFMLGLLVANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTV
ELAFKHCKDPLYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLII
LQFCAIYETPKNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVKNHN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g674.t6 Gene3D G3DSA:1.20.144.10 - 1 90 1.7E-5
2 g674.t6 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 1 231 7.9E-29
1 g674.t6 Pfam PF01569 PAP2 superfamily 3 75 7.5E-8
10 g674.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 31 -
20 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
14 g674.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 51 55 -
15 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 56 79 -
9 g674.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
18 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
13 g674.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 138 -
16 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 160 -
8 g674.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 171 -
17 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 190 -
12 g674.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 195 -
19 g674.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 196 217 -
11 g674.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 218 236 -
6 g674.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 53 75 -
4 g674.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 90 109 -
5 g674.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 168 190 -
3 g674.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 195 217 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed