Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glucose-6-phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g674 g674.t8 TTS g674.t8 5209165 5209165
chr_3 g674 g674.t8 isoform g674.t8 5209193 5211200
chr_3 g674 g674.t8 exon g674.t8.exon1 5209193 5210239
chr_3 g674 g674.t8 cds g674.t8.CDS1 5210017 5210239
chr_3 g674 g674.t8 exon g674.t8.exon2 5210295 5211200
chr_3 g674 g674.t8 cds g674.t8.CDS2 5210295 5211109
chr_3 g674 g674.t8 TSS g674.t8 5211298 5211298

Sequences

>g674.t8 Gene=g674 Length=1953
ATGGAGATAATTGACAGCTTATGGAAAATAGAAATCGATTTAATTATTAAAATTCAAAAC
AAGTAAGTTTTCCAAAGAATTTCATAAATTTATGAAAAATTTCCATGAAAAAAATTTCCC
TTTCAGGTTTTTCAAATATGAAGAATTTCTCGGATATTTTTCAACATTTTTTGGTTCGGG
ATATCTCCACTTGTACATTATTCCATTGTTTGCAATGTACAACACAAAAGTTTATCATCG
TTTATTGATTTCATGCATTGCGACTGATTTTATTAATCTCATTATAAAATGGATTTTAGA
TGAAGATCGACCTTACTGGTGGGTCAATGAAACAAAAGCTTACACATCACTCACCCGACC
AATATTATATCAAACTGAAAGAACTTGTGAGACATCGGGTGGATCACCATCAGGTCATTC
GATGATTGCTGCATGTTTTCTATACATCATCTATGACGAAATCAACCGACAAATCGACAA
TCGTCCTTCAATGTCGCACAAAGTCATACTGAAAATTCTAAACAAAATTGGACTGACTTT
TATACTTACAATTACTGCCATATCGAGAATGTACTTTGCTGCACATTTTTTGCATCAATG
TATTTTAGGTTTCATGCTTGGACTTTTAGTAGCAAATTTAATGGCAAATCATGGATTGGC
TGAAAAATTTTCGAGTTTTGAAAAACGAACTTGGATGACAATAATTGCTTGGATGATAAT
TTTGGTAGTGTCAATTTATTGGGCCCATAAATTAATTAGTGGAAATCCAATGAAAACAGT
AGAATTGGCATTCAAACATTGCAAAGATCCACTCTATCCTAAGCCTGAAACTACTGTCGT
TTTTTCTGCTCTCCGATGCATTGCGATGTCTTGTGGAATTTTGTTAAATGCACCAATTTA
CAAAAGAGAGTCAAAATTGAAATTCTTTGAATCAGCAGTAATGACAATATGTTTAATTAT
TCTTCAATTCTGTGCAATTTATGAAACACCAAAGAATTACAAAATTATCATTTTCTATAG
TTATTCATTTATTATTTATGCATTTTTCCAATTTATGTTCATCTATTTTGTTCCAAAAAT
TGCAACAATAACTAATGAAAATTCTCAAGAAAAAGTCAAAAATCAGTAATATTAACCGTC
AGTGACGTGTTAAAAGCGCATTTTCCCGCAACAGATTAGTTTTGTTTAAAAATTTATTGA
AAGTTTCAAAAAAATTTATTCCGGCCTTTTTGAAGTCTGTACAATTTAAAACATACACTT
GGGTCCAAATGTCCAAAAATCACTTCTGACATGTTTTTCTCGACGTTTTATGACATTTTA
AGACTTTTTGGTGAAAACAATTTTTTTGGTCCATGTGATGGACATCCACCACATGCATGC
CCTTGGGTCACCACCAATCTATAAACTTTTTATGCCATCTTATTCTACGCTTCAAGACCT
TTCCAACGAGTATAAATATGTCTGTATTTGAAAAATTTCGATTTTTGGTCCATGTGATGC
ACCTGTGCGGCACATGCATACACTTGGAATAAAATGTCCAAAAATCATTTTTGACTTGTA
TTCTCGATGTTTTATGATATTATAAGATTTTTTGGTGAAAAAAAGTTTTTTTGGTCCATG
TGGTGGACGTCCACCATATGCATGCCATAGCTCGGCATGGAGAACGAATCTCGCGGAAAG
CTTCCGTTACACCGGTCTCATAGTCAGAACCAACAGATTGGTGCAAAAAGTTTTGAGAGA
AAAACCGTTTTTTGAAAGACTAGTTACGGAGACAGACAGACAGACAGACAGACAGACGGA
CAGACGGACAGACGGACAGACGGACAGACGGACAGACAAAAAGTGGGGACAATAGCGCCT
TTTTTCTAAATCTGATGGAAAATGCGCTAAAAATAATTAAATGTTTAACGTATTTATAGA
AAAATTCAAATAAAACCATATAAATGTTAAAAA

>g674.t8 Gene=g674 Length=345
MKNFHEKNFPFRFFKYEEFLGYFSTFFGSGYLHLYIIPLFAMYNTKVYHRLLISCIATDF
INLIIKWILDEDRPYWWVNETKAYTSLTRPILYQTERTCETSGGSPSGHSMIAACFLYII
YDEINRQIDNRPSMSHKVILKILNKIGLTFILTITAISRMYFAAHFLHQCILGFMLGLLV
ANLMANHGLAEKFSSFEKRTWMTIIAWMIILVVSIYWAHKLISGNPMKTVELAFKHCKDP
LYPKPETTVVFSALRCIAMSCGILLNAPIYKRESKLKFFESAVMTICLIILQFCAIYETP
KNYKIIIFYSYSFIIYAFFQFMFIYFVPKIATITNENSQEKVKNQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g674.t8 Gene3D G3DSA:1.20.144.10 - 13 200 9.3E-14
2 g674.t8 PANTHER PTHR12591 GLUCOSE-6-PHOSPHATASE 12 339 1.5E-63
3 g674.t8 PANTHER PTHR12591:SF0 FI19814P1 12 339 1.5E-63
25 g674.t8 PIRSF PIRSF000905 G6Pase 6 343 6.2E-49
1 g674.t8 Pfam PF01569 PAP2 superfamily 51 185 1.5E-20
13 g674.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
20 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 43 -
10 g674.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 49 -
18 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 50 69 -
14 g674.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 70 102 -
21 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 103 121 -
6 g674.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 141 -
16 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 160 -
12 g674.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 161 165 -
17 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 166 189 -
9 g674.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 190 200 -
19 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 201 219 -
11 g674.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 220 248 -
24 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 270 -
8 g674.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 271 281 -
23 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 282 300 -
15 g674.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 301 305 -
22 g674.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 306 327 -
7 g674.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 328 345 -
32 g674.t8 SMART SM00014 acid_phosph_2 46 185 2.6E-15
4 g674.t8 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 22 184 1.96E-14
26 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
29 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 47 69 -
31 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 163 185 -
28 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 200 219 -
27 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 278 300 -
30 g674.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 305 327 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004346 glucose-6-phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values