General information for g6752.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t1 | TTS | g6752.t1 | 18476063 | 18476063 |
| chr_2 | g6752 | g6752.t1 | isoform | g6752.t1 | 18476705 | 18483503 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon1 | 18476705 | 18476867 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS1 | 18476705 | 18476867 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon2 | 18477976 | 18478109 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS2 | 18477976 | 18478109 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon3 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS3 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon5 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS5 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon6 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS6 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon7 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS7 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon8 | 18480093 | 18480561 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS8 | 18480093 | 18480561 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon9 | 18480626 | 18480724 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS9 | 18480626 | 18480724 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon10 | 18481839 | 18481997 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS10 | 18481839 | 18481997 |
| chr_2 | g6752 | g6752.t1 | exon | g6752.t1.exon11 | 18483240 | 18483503 |
| chr_2 | g6752 | g6752.t1 | cds | g6752.t1.CDS11 | 18483240 | 18483503 |
| chr_2 | g6752 | g6752.t1 | TSS | g6752.t1 | NA | NA |
Sequences
>g6752.t1 Gene=g6752 Length=2094
ATGAGTTCAACGACACCAACTGGTCCTCCGCCAGTGCCACCGTCTAAGCCTATTTTATCA
ACTCCCGGTTCATATATGTCATCATTTCAATCAGGCCACACTGCTACTATTCACAGTATT
AATAAGACACATGATAAACCTGCGATCGCAGCTCGTCCGATACCTCCACCAACAGTTCCC
AAATATTCTTCATCATTTGGAAAAATAGATCGCGAAAGAAATGAATTTGGCGGTAATAAA
ATTGATCGACTTGAACGTGAAAAGGAAGGAATTGGTGGTTCATATCGATTAGCAAGTCTA
GATCGTTTAGCGAATCGTCAAAGATTATTGGAACAAAATAATGGTTTAGGACAAGTAGAT
GCTAAAAATAATGGAGTCATTGATAATAATAATGGTCAGAATGGTGGCAACCTGAATTCC
GGGTTACAATCTAAACGTGAAATGTTTTTTAAGGGTGAAGCTCAAGTTAGTCCTCAAGGT
CCACCTCCTCAACCACCACTTATCAATTCTTCGTCTATACAGAACAATATCAACGAGAAA
AATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAAAACAGCATAAACAAA
TTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAGGATTCAAATAAATTG
GCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGACCAAAAGTAAAAGAA
CTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTACAGAAAGGCCGTTAAA
AAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTCGGAAAATCGACTCTT
ATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACACCCTGGTCCGTCATTT
AGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTACGTGAAAACGGTGTT
AATTTAACATTGACTATTGTTGATACACCAGGCTTCGGAGATGCAGTCGATAATAGCAAC
TGCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAATACTTGACAGCTGAG
TCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATGTTTGTATTTCATT
GCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCATGCAAAGATTACATGAC
AAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCACGCCAGAAGAAATGCAA
CAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAATCAAGATCTACGATTTT
CCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAGTTACGTACACGTGTT
CCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGAAGAAAAGTTAGAGGT
AGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCATTGCT
CTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAACGTT
CACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAA
CTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAACGTGAACATGATTCAAAG
ATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAG
CAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCACGAAGAAAGAAAGAAGGCA
CTTGAACTTCAAATTCGTGAATTAGAAGAACGCCGAAAAGCATTTGAACAAGAAAAAGCA
GAATGGGAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGAAAGAGTTTGGAAGCC
AATAGCAAAGAGACGGGTTCATTGGCATCACGAACGTCAGAGGAATCAAAGAAAAGTCGT
GTATTTGGATCATTATTACGACGACATACGTCATTTGGTGCGCCCGATTCAAGAACTTTA
ACAGCACCTCCAACAATTTCAGCACCTATCATGCATAATGATAATCAGGAATAA
>g6752.t1 Gene=g6752 Length=697
MSSTTPTGPPPVPPSKPILSTPGSYMSSFQSGHTATIHSINKTHDKPAIAARPIPPPTVP
KYSSSFGKIDRERNEFGGNKIDRLEREKEGIGGSYRLASLDRLANRQRLLEQNNGLGQVD
AKNNGVIDNNNGQNGGNLNSGLQSKREMFFKGEAQVSPQGPPPQPPLINSSSIQNNINEK
NHINTNGTHTNNTVQNSINKLIMKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKE
LDGYVGFANLPNQVYRKAVKKGFEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSF
RAKKTVAVETTKVLLRENGVNLTLTIVDTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAE
SRVHRKAISDSRVHLCLYFIAPSGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQ
QFKKQVLNEIAQNKIKIYDFPEPLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRG
RKYPYGVVEVENLDHCDFIALRNMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTK
LSNKNPLAQMEEEKREHDSKMKKMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKA
LELQIRELEERRKAFEQEKAEWEQQNNVTLEELRRKSLEANSKETGSLASRTSEESKKSR
VFGSLLRRHTSFGAPDSRTLTAPPTISAPIMHNDNQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6752.t1 | CDD | cd01850 | CDC_Septin | 261 | 534 | 4.86485E-152 |
| 7 | g6752.t1 | Coils | Coil | Coil | 547 | 581 | - |
| 6 | g6752.t1 | Coils | Coil | Coil | 591 | 632 | - |
| 5 | g6752.t1 | Gene3D | G3DSA:3.40.50.300 | - | 239 | 534 | 1.1E-123 |
| 9 | g6752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - |
| 12 | g6752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - |
| 10 | g6752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 697 | - |
| 11 | g6752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 697 | - |
| 2 | g6752.t1 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 212 | 653 | 8.0E-209 |
| 3 | g6752.t1 | PANTHER | PTHR18884 | SEPTIN | 212 | 653 | 8.0E-209 |
| 1 | g6752.t1 | Pfam | PF00735 | Septin | 261 | 535 | 9.7E-123 |
| 13 | g6752.t1 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 261 | 532 | 107.441 |
| 4 | g6752.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 245 | 505 | 2.03E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16944 (septin 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
