Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein peanut.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6752 g6752.t14 isoform g6752.t14 18477977 18488213
chr_2 g6752 g6752.t14 exon g6752.t14.exon1 18477977 18478109
chr_2 g6752 g6752.t14 cds g6752.t14.CDS1 18477978 18478109
chr_2 g6752 g6752.t14 exon g6752.t14.exon2 18478169 18478334
chr_2 g6752 g6752.t14 cds g6752.t14.CDS2 18478169 18478334
chr_2 g6752 g6752.t14 exon g6752.t14.exon3 18479196 18479358
chr_2 g6752 g6752.t14 cds g6752.t14.CDS3 18479196 18479358
chr_2 g6752 g6752.t14 exon g6752.t14.exon4 18479421 18479705
chr_2 g6752 g6752.t14 cds g6752.t14.CDS4 18479421 18479705
chr_2 g6752 g6752.t14 exon g6752.t14.exon5 18479761 18479921
chr_2 g6752 g6752.t14 cds g6752.t14.CDS5 18479761 18479921
chr_2 g6752 g6752.t14 exon g6752.t14.exon6 18479986 18480016
chr_2 g6752 g6752.t14 cds g6752.t14.CDS6 18479986 18480016
chr_2 g6752 g6752.t14 exon g6752.t14.exon7 18480093 18480561
chr_2 g6752 g6752.t14 cds g6752.t14.CDS7 18480093 18480561
chr_2 g6752 g6752.t14 exon g6752.t14.exon8 18480626 18480724
chr_2 g6752 g6752.t14 cds g6752.t14.CDS8 18480626 18480724
chr_2 g6752 g6752.t14 exon g6752.t14.exon9 18481839 18481997
chr_2 g6752 g6752.t14 cds g6752.t14.CDS9 18481839 18481997
chr_2 g6752 g6752.t14 exon g6752.t14.exon10 18487869 18488213
chr_2 g6752 g6752.t14 cds g6752.t14.CDS10 18487869 18487886
chr_2 g6752 g6752.t14 TSS g6752.t14 18488214 18488214
chr_2 g6752 g6752.t14 TTS g6752.t14 NA NA

Sequences

>g6752.t14 Gene=g6752 Length=2011
GTCTTCGTTCGGATTTCTATCGCGATAGTTCATACTCAAGTTACTCTCGCCACTGTCTAC
CAACGTAATTTCAGCTTAGTTAAGTTAATTAAAAAAATTTTGCAATCTACATAAAAATAA
AAGCTGAACGAAAAGCAATTTTAATTGCAAATCTTTACGCAATTTTGCACGCTTGAAAAA
AAAAATTTCACTTGCTCTGCATTATTTTCATAACAATAAAAAGCGCAAAGTCTAAAATAA
AAAAAATGAGTGTAATTTTAAAAATTGATCCTTCAAAAAAGGACGTTATTATTAATACAC
ATAATGGAATAACTATAAATAACAATAATGTCATCAAATGTAAGTGAAGGAATTGGTGGT
TCATATCGATTAGCAAGTCTAGATCGTTTAGCGAATCGTCAAAGATTATTGGAACAAAAT
AATGGTTTAGGACAAGTAGATGCTAAAAATAATGGAGTCATTGATAATAATAATGGTCAG
AATGGTGGCAACCTGAATTCCGGGTTACAATCTAAACGTGAAATGTTTTTTAAGGGTGAA
GCTCAAGTTAGTCCTCAAGGTCCACCTCCTCAACCACCACTTATCAATTCTTCGTCTATA
CAGAACAATATCAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACA
GTGCAAAACAGCATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCAT
CATCAGGATTCAAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATT
GTACGACCAAAAGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAA
GTTTACAGAAAGGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCG
GGACTCGGAAAATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAA
CAACACCCTGGTCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTT
TTATTACGTGAAAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGCTTCGGA
GATGCAGTCGATAATAGCAACTGCTGGACACCAATAATAGATTTTGTGGAATCCAAATAT
GAAGAATACTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTT
CACTTATGTTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAA
TTCATGCAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACA
CTCACGCCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAAT
AAAATCAAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTA
CGTCAGTTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTT
GAAGGAAGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTT
GATCATTGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTA
AAGGACGTTACTAACAACGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTT
GGTAACGATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAA
AAACGTGAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAA
ATGAAAGTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGT
CACGAAGAAAGAAAGAAGGCACTTGAACTTCAAATTCGTGAATTAGAAGAACGCCGAAAA
GCATTTGAACAAGAAAAAGCAGAATGGGAGCAACAGAATAACGTTACACTTGAGGAATTG
AGACGAAAGAGTTTGGAAGCCAATAGCAAAG

>g6752.t14 Gene=g6752 Length=561
MSSNVSEGIGGSYRLASLDRLANRQRLLEQNNGLGQVDAKNNGVIDNNNGQNGGNLNSGL
QSKREMFFKGEAQVSPQGPPPQPPLINSSSIQNNINEKNHINTNGTHTNNTVQNSINKLI
MKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKG
FEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNL
TLTIVDTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIAP
SGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPE
PLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALR
NMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMK
KMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKALELQIRELEERRKAFEQEKAEW
EQQNNVTLEELRRKSLEANSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g6752.t14 CDD cd01850 CDC_Septin 179 452 9.73813E-153
7 g6752.t14 Coils Coil Coil 465 499 -
6 g6752.t14 Coils Coil Coil 509 561 -
5 g6752.t14 Gene3D G3DSA:3.40.50.300 - 157 452 6.6E-124
2 g6752.t14 PANTHER PTHR18884:SF123 SEPTIN-7 130 557 3.7E-207
3 g6752.t14 PANTHER PTHR18884 SEPTIN 130 557 3.7E-207
1 g6752.t14 Pfam PF00735 Septin 179 453 5.8E-123
8 g6752.t14 ProSiteProfiles PS51719 Septin-type guanine nucleotide-binding (G) domain profile. 179 450 107.441
4 g6752.t14 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 163 423 1.22E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values