General information for g6752.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t15 | isoform | g6752.t15 | 18477977 | 18490178 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon1 | 18477977 | 18478109 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS1 | 18477978 | 18478109 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon2 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS2 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon3 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS3 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon4 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS4 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon5 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS5 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon6 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS6 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon7 | 18480093 | 18480561 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS7 | 18480093 | 18480561 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon8 | 18480626 | 18480724 |
| chr_2 | g6752 | g6752.t15 | cds | g6752.t15.CDS8 | 18480626 | 18480706 |
| chr_2 | g6752 | g6752.t15 | exon | g6752.t15.exon9 | 18489992 | 18490178 |
| chr_2 | g6752 | g6752.t15 | TSS | g6752.t15 | 18490172 | 18490172 |
| chr_2 | g6752 | g6752.t15 | TTS | g6752.t15 | NA | NA |
Sequences
>g6752.t15 Gene=g6752 Length=1694
GCTACAGTCGCCCGTTTGTTTGAGATTCAAATATCGCAAAAAAATATTATTGTGACAAAA
ATATAAAATCCTTATAGAAATCAAGTGATTTTATTAAATAAAACTTATATTCTATCTTTA
TAAGATATCAGTGTTTATTTATCGTTGGAATTCAATTGATTAAAAGCAATGAATCATCAC
AAATTAATTACAATCTAAACGTGAAATGTTTTTTAAGGGTGAAGCTCAAGTTAGTCCTCA
AGGTCCACCTCCTCAACCACCACTTATCAATTCTTCGTCTATACAGAACAATATCAACGA
GAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAAAACAGCATAAA
CAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAGGATTCAAATAA
ATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGACCAAAAGTAAA
AGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTACAGAAAGGCCGT
TAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTCGGAAAATCGAC
TCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACACCCTGGTCCGTC
ATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTACGTGAAAACGG
TGTTAATTTAACATTGACTATTGTTGATACACCAGGCTTCGGAGATGCAGTCGATAATAG
CAACTGCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAATACTTGACAGC
TGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATGTTTGTATTT
CATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCATGCAAAGATTACA
TGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCACGCCAGAAGAAAT
GCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAATCAAGATCTACGA
TTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAGTTACGTACACG
TGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGAAGAAAAGTTAG
AGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCAT
TGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAA
CGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAAC
TAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAACGTGAACATGATTC
AAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATGAAAGTTAAAGAGAA
GAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCACGAAGAAAGAAAGAA
GGCACTTGAACTTCAAATTCGTGAATTAGAAGAACGCCGAAAAGCATTTGAACAAGAAAA
AGCAGAATGGGAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGAAAGAGTTTGGA
AGCCAATAGCAAAG
>g6752.t15 Gene=g6752 Length=496
MFFKGEAQVSPQGPPPQPPLINSSSIQNNINEKNHINTNGTHTNNTVQNSINKLIMKEKE
ANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKGFEFTL
MVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNLTLTIV
DTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIAPSGHGL
KQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPEPLEDE
EEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALRNMVVR
THLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMKKMEAE
MEQVFEMKVKEKKQKLKDSELELTRRHEERKKALELQIRELEERRKAFEQEKAEWEQQNN
VTLEELRRKSLEANSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6752.t15 | CDD | cd01850 | CDC_Septin | 114 | 387 | 7.08824E-153 |
| 6 | g6752.t15 | Coils | Coil | Coil | 400 | 434 | - |
| 7 | g6752.t15 | Coils | Coil | Coil | 444 | 485 | - |
| 5 | g6752.t15 | Gene3D | G3DSA:3.40.50.300 | - | 92 | 387 | 4.7E-124 |
| 2 | g6752.t15 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 68 | 492 | 2.5E-206 |
| 3 | g6752.t15 | PANTHER | PTHR18884 | SEPTIN | 68 | 492 | 2.5E-206 |
| 8 | g6752.t15 | PIRSF | PIRSF006698 | Septin | 22 | 496 | 1.9E-159 |
| 1 | g6752.t15 | Pfam | PF00735 | Septin | 114 | 388 | 4.3E-123 |
| 10 | g6752.t15 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 114 | 385 | 107.441 |
| 4 | g6752.t15 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 98 | 358 | 8.74E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16944 (septin 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
