General information for g6752.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t16 | isoform | g6752.t16 | 18478169 | 18480558 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon1 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS1 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon3 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS3 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon4 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS4 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon5 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS5 | 18479986 | 18480016 |
| chr_2 | g6752 | g6752.t16 | exon | g6752.t16.exon6 | 18480093 | 18480558 |
| chr_2 | g6752 | g6752.t16 | cds | g6752.t16.CDS6 | 18480093 | 18480477 |
| chr_2 | g6752 | g6752.t16 | TSS | g6752.t16 | NA | NA |
| chr_2 | g6752 | g6752.t16 | TTS | g6752.t16 | NA | NA |
Sequences
>g6752.t16 Gene=g6752 Length=1272
AATATCAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAA
AACAGCATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAG
GATTCAAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGA
CCAAAAGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTAC
AGAAAGGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTC
GGAAAATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACAC
CCTGGTCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTA
CGTGAAAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGCTTCGGAGATGCA
GTCGATAATAGCAACTGCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAA
TACTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTA
TGTTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCATG
CAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCACG
CCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAATC
AAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAG
TTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGA
AGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGATCAT
TGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAGGAC
GTTACTAACAACGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGTAAC
GATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAACGT
GAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATGAAA
GTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCACGAA
GAAAGAAAGAAG
>g6752.t16 Gene=g6752 Length=397
MKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKG
FEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNL
TLTIVDTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIAP
SGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPE
PLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALR
NMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMK
KMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6752.t16 | CDD | cd01850 | CDC_Septin | 59 | 332 | 1.22856E-155 |
| 6 | g6752.t16 | Coils | Coil | Coil | 345 | 379 | - |
| 5 | g6752.t16 | Gene3D | G3DSA:3.40.50.300 | - | 37 | 332 | 2.4E-124 |
| 12 | g6752.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 10 | g6752.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 360 | - |
| 11 | g6752.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 360 | - |
| 9 | g6752.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 397 | - |
| 2 | g6752.t16 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 21 | 396 | 7.2E-199 |
| 3 | g6752.t16 | PANTHER | PTHR18884 | SEPTIN | 21 | 396 | 7.2E-199 |
| 7 | g6752.t16 | PIRSF | PIRSF006698 | Septin | 2 | 397 | 2.1E-156 |
| 1 | g6752.t16 | Pfam | PF00735 | Septin | 59 | 333 | 2.2E-123 |
| 13 | g6752.t16 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 59 | 330 | 107.441 |
| 4 | g6752.t16 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 43 | 303 | 4.53E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16944 (septin 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed