Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein peanut.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6752 g6752.t19 isoform g6752.t19 18479421 18480558
chr_2 g6752 g6752.t19 exon g6752.t19.exon1 18479421 18479705
chr_2 g6752 g6752.t19 cds g6752.t19.CDS1 18479422 18479705
chr_2 g6752 g6752.t19 exon g6752.t19.exon2 18479761 18479921
chr_2 g6752 g6752.t19 cds g6752.t19.CDS2 18479761 18479921
chr_2 g6752 g6752.t19 exon g6752.t19.exon3 18479986 18480016
chr_2 g6752 g6752.t19 cds g6752.t19.CDS3 18479986 18480016
chr_2 g6752 g6752.t19 exon g6752.t19.exon4 18480093 18480558
chr_2 g6752 g6752.t19 cds g6752.t19.CDS4 18480093 18480477
chr_2 g6752 g6752.t19 TSS g6752.t19 NA NA
chr_2 g6752 g6752.t19 TTS g6752.t19 NA NA

Sequences

>g6752.t19 Gene=g6752 Length=943
AATATCAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAA
AACAGCATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAG
GATTCAAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGA
CCAAAAGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTAC
AGAAAGGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTC
GGAAAATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACAC
CCTGGTCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTA
CGTGAAAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGCTTCGGAGATGCA
GTCGATAATAGCAACTGCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAA
TACTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTA
TGTTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCATG
CAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCACG
CCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAATC
AAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAG
TTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGA
AGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAG

>g6752.t19 Gene=g6752 Length=287
MKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKG
FEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNL
TLTIVDTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIAP
SGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPE
PLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6752.t19 CDD cd01850 CDC_Septin 59 287 8.85121E-128
5 g6752.t19 Gene3D G3DSA:3.40.50.300 - 37 287 6.6E-100
8 g6752.t19 MobiDBLite mobidb-lite consensus disorder prediction 1 29 -
2 g6752.t19 PANTHER PTHR18884:SF123 SEPTIN-7 21 287 2.6E-139
3 g6752.t19 PANTHER PTHR18884 SEPTIN 21 287 2.6E-139
6 g6752.t19 PIRSF PIRSF006698 Septin 2 287 3.3E-120
1 g6752.t19 Pfam PF00735 Septin 59 287 2.6E-100
9 g6752.t19 ProSiteProfiles PS51719 Septin-type guanine nucleotide-binding (G) domain profile. 59 287 89.416
4 g6752.t19 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 43 284 7.29E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed