General information for g6752.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t3 | isoform | g6752.t3 | 18475621 | 18479424 |
| chr_2 | g6752 | g6752.t3 | exon | g6752.t3.exon1 | 18475621 | 18476066 |
| chr_2 | g6752 | g6752.t3 | exon | g6752.t3.exon2 | 18477976 | 18478081 |
| chr_2 | g6752 | g6752.t3 | cds | g6752.t3.CDS1 | 18478080 | 18478081 |
| chr_2 | g6752 | g6752.t3 | exon | g6752.t3.exon3 | 18478165 | 18478334 |
| chr_2 | g6752 | g6752.t3 | cds | g6752.t3.CDS2 | 18478165 | 18478334 |
| chr_2 | g6752 | g6752.t3 | exon | g6752.t3.exon4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t3 | cds | g6752.t3.CDS3 | 18479196 | 18479317 |
| chr_2 | g6752 | g6752.t3 | exon | g6752.t3.exon5 | 18479421 | 18479424 |
| chr_2 | g6752 | g6752.t3 | TSS | g6752.t3 | NA | NA |
| chr_2 | g6752 | g6752.t3 | TTS | g6752.t3 | NA | NA |
Sequences
>g6752.t3 Gene=g6752 Length=889
GAAGTGGAAAATCTTGATCATTGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACA
CATTTACAAGACCTAAAGGACGTTACTAACAACGTTCACTACGAAAATTATCGATGTCGA
AAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCA
CAAATGGAAGAGGAAAAACGTGAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATG
GAACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTC
GAACTTACCAGACGTCACGAAGAAAGAAAGAAGGTTTAAGAACGCCGAAAAGCATTTGAA
CAAGAAAAAGCAGAATGGGAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGAAAG
AGTTTGGAAGCCAATAGCAAAGAAAAAAGAAAGAAAAGAAAAAAGGCTTGTTTTAAAGCA
AGTTTTGATTGAAAAACGTTTGATATGAATTGTCGCCAAATACAAAATTCCCAACATATA
CTCTGAGCTATCGAATTTTTGATTCCTTCAAATCAAACTATTAAGGATAGTAATAGCAAA
AGAAACATTTCAAAGCACATGGAAACACACTTAATTAATCTATTGTGAGAAAAATAAATA
TATATTTAATAAAAAAATAATAATGCAATATTGACAGAATATATTTTTTAAAAAAGCTCA
TTTCTTCCTTGTCTTAATTTGCTTCCTTTTATAATGACAAACAATTTTAAAAAAAGAAAA
TGGACAGGAAAGAATATTAATGATAGTATTTAGCTCTACTTTATCGAAAGTGAATAAAAT
TATTTAAATAAAGATTTACTACCTAATAAGGATTAAAGTTGATTACATA
>g6752.t3 Gene=g6752 Length=97
MVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMKK
MEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6752.t3 | Coils | Coil | Coil | 44 | 78 | - |
| 8 | g6752.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 31 | 1.0E-7 |
| 7 | g6752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 59 | - |
| 6 | g6752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 59 | - |
| 4 | g6752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 92 | - |
| 5 | g6752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 97 | - |
| 2 | g6752.t3 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 1 | 95 | 8.4E-37 |
| 3 | g6752.t3 | PANTHER | PTHR18884 | SEPTIN | 1 | 95 | 8.4E-37 |
| 1 | g6752.t3 | Pfam | PF00735 | Septin | 1 | 32 | 2.2E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
