Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein peanut.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6752 g6752.t5 isoform g6752.t5 18476034 18479438
chr_2 g6752 g6752.t5 exon g6752.t5.exon1 18476034 18476085
chr_2 g6752 g6752.t5 TTS g6752.t5 18476063 18476063
chr_2 g6752 g6752.t5 exon g6752.t5.exon2 18477976 18478109
chr_2 g6752 g6752.t5 cds g6752.t5.CDS1 18478102 18478109
chr_2 g6752 g6752.t5 exon g6752.t5.exon3 18478165 18478334
chr_2 g6752 g6752.t5 cds g6752.t5.CDS2 18478165 18478334
chr_2 g6752 g6752.t5 exon g6752.t5.exon4 18479196 18479358
chr_2 g6752 g6752.t5 cds g6752.t5.CDS3 18479196 18479317
chr_2 g6752 g6752.t5 exon g6752.t5.exon5 18479421 18479438
chr_2 g6752 g6752.t5 TSS g6752.t5 NA NA

Sequences

>g6752.t5 Gene=g6752 Length=537
CCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCATTGCTCTTCGAAATA
TGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAACGTTCACTACGAAA
ATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAACTTTCAAATA
AGAATCCTCTTGCACAAATGGAAGAGGAAAAACGTGAACATGATTCAAAGATGAAGAAAA
TGGAAGCTGAAATGGAACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAGCAAAAATTGA
AAGATTCTGAACTCGAACTTACCAGACGTCACGAAGAAAGAAAGAAGGTTTGCACTTGAA
CTTCAAATTCGTGAATTAGAAGAACGCCGAAAAGCATTTGAACAAGAAAAAGCAGAATGG
GAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGAAAGAGTTTGGAAGCCAATAGC
AAAGAAACTATGGACGGTAAAGAGAAAAAGAAAGAAAAGAAAAAAGGCTTGTTTTAA

>g6752.t5 Gene=g6752 Length=99
MVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMKK
MEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKVCT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g6752.t5 Coils Coil Coil 44 78 -
7 g6752.t5 Gene3D G3DSA:3.40.50.300 - 1 31 1.1E-7
6 g6752.t5 MobiDBLite mobidb-lite consensus disorder prediction 33 59 -
5 g6752.t5 MobiDBLite mobidb-lite consensus disorder prediction 44 59 -
4 g6752.t5 MobiDBLite mobidb-lite consensus disorder prediction 77 99 -
2 g6752.t5 PANTHER PTHR18884:SF123 SEPTIN-7 1 95 4.5E-37
3 g6752.t5 PANTHER PTHR18884 SEPTIN 1 95 4.5E-37
1 g6752.t5 Pfam PF00735 Septin 1 32 2.3E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values