Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative phosphatidate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6763 g6763.t2 isoform g6763.t2 18511735 18521176
chr_2 g6763 g6763.t2 exon g6763.t2.exon1 18511735 18512178
chr_2 g6763 g6763.t2 TSS g6763.t2 18511756 18511756
chr_2 g6763 g6763.t2 exon g6763.t2.exon2 18513276 18513519
chr_2 g6763 g6763.t2 cds g6763.t2.CDS1 18513276 18513519
chr_2 g6763 g6763.t2 exon g6763.t2.exon3 18515839 18515990
chr_2 g6763 g6763.t2 cds g6763.t2.CDS2 18515839 18515990
chr_2 g6763 g6763.t2 exon g6763.t2.exon4 18518758 18518958
chr_2 g6763 g6763.t2 cds g6763.t2.CDS3 18518758 18518958
chr_2 g6763 g6763.t2 exon g6763.t2.exon5 18520566 18520745
chr_2 g6763 g6763.t2 cds g6763.t2.CDS4 18520566 18520745
chr_2 g6763 g6763.t2 exon g6763.t2.exon6 18520830 18520953
chr_2 g6763 g6763.t2 cds g6763.t2.CDS5 18520830 18520953
chr_2 g6763 g6763.t2 exon g6763.t2.exon7 18521022 18521176
chr_2 g6763 g6763.t2 cds g6763.t2.CDS6 18521022 18521176
chr_2 g6763 g6763.t2 TTS g6763.t2 18521641 18521641

Sequences

>g6763.t2 Gene=g6763 Length=1500
AGTGTTAAACGAATAATGTTTCAGTCTACAATGATATTTCATTCGTAACGCACGCAAATT
AGGGTTTTTTCGTGTAAAATAAGAGAGAAAAGTGCACTTGAACTTAGAGTAGAAGCAAAA
GAAGAGAGAGAAAAAATATAGCACGCGATCAGTCGGAAGTTGCAATTCACTAATAAAAAA
GATGATCGCAGTGATGAATGCGAAATATAGAAATGAAAAGTGAAGTTATTTAAAAATAAA
TTTATGTGTGCCTTATTGTGAAAATAAAAGGAATAAAAATAAAAACATAAATTTCAAAAT
ATTTGAAGCGTCAAATTCTGTATATGTGCAAAGATCCTCTTTGCCACTTTAAATGCACTG
TCATCACAATTAAATATTCGTAAATTTTTTTTTCACAAACAATATTTAGACTCGCGTGTT
CATCGCTCAAGGAAAGAAGATCAAATGGTGAATCAAAACGGAAAAACGGTCGTAGTGAAA
TTACCCATGGAGCAGTCACACATAGATTCGACTGAAACATCTCCATTAAATCAGCGCCTA
CGTGATAACAATTCTGATATATCATCCTCACCCTCATCAGCTGTCAATAGTGATCAAAGT
TCAAAGAAACTTTTGCATAACTCAAGTACAAATCAATCCCGAAAAATTCTGCTTAATATT
TTCGTCGATGTGATTGTACTTTGCCTCGTCGGAAGCGCGATCGTAATTTTCTTCCTCATT
GGTGAGCCTTACGAACGGGGTTTCTTCTGTAATGATGAATCGTTACTTCATCCACACCAC
ACGTCAACTGTCAAGCATTGGATGCTGTTTTTGTTTGGAATTGTCGTACCTATAGTTGTG
ATTTTTTTCAATGAGATTGTACGTTCAAAAAAGAATTTAGATGAAAAGAGTGAATTAAAA
CTTTTCAATTGGACGATATCAGCATGCAAGCAAAATTTATACAAATTTATTGGAATGTTT
TTACTTGGTACAGCAAGCTGTCAGCTCTTGACCGACATTGGAAAATATTCAATTGGGAGA
TATCGACCATATTTTATAACACTATGTCAGCCGATTTTATCCGATGGAACAAATTGCAGT
GACCCAAAAAATTTGTATCAATACATTACAAACTTTACCTGCAATAATCCGGCAGTTACT
GAGAAGATGCTTAAAGATATCCGTATGTCTTTTCCCAGTGCTAATTCTAGTTTCTCTTTC
TTTACCATGACATACTGTGCGCTTTATCTCAACGCGCGCTTTGAATGGAACGGCACCAAA
ATTCTAAATTATTTTCTCCAATTTATGCTGATTGCTTTAGCTTGGTTCACATCACTTTCT
CGTATTTCGGATTATAAACATCACTGGTCGGACGTTTTAGCCGGTAGCACGCTAGGTTTT
CTTCTCGCAATATTTGTTTGTCATTTTATATTAAAACTACAGAAGCGTGAGAAATGCTCC
AATTTAAAATTGCCGAGCACAAAATATGAATTAAGTACACAGACTCAGAATCAAATTTAA

>g6763.t2 Gene=g6763 Length=351
MVNQNGKTVVVKLPMEQSHIDSTETSPLNQRLRDNNSDISSSPSSAVNSDQSSKKLLHNS
STNQSRKILLNIFVDVIVLCLVGSAIVIFFLIGEPYERGFFCNDESLLHPHHTSTVKHWM
LFLFGIVVPIVVIFFNEIVRSKKNLDEKSELKLFNWTISACKQNLYKFIGMFLLGTASCQ
LLTDIGKYSIGRYRPYFITLCQPILSDGTNCSDPKNLYQYITNFTCNNPAVTEKMLKDIR
MSFPSANSSFSFFTMTYCALYLNARFEWNGTKILNYFLQFMLIALAWFTSLSRISDYKHH
WSDVLAGSTLGFLLAIFVCHFILKLQKREKCSNLKLPSTKYELSTQTQNQI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6763.t2 CDD cd03384 PAP2_wunen 165 319 5.66591E-62
5 g6763.t2 Gene3D G3DSA:1.20.144.10 - 115 349 3.3E-34
23 g6763.t2 MobiDBLite mobidb-lite consensus disorder prediction 37 56 -
2 g6763.t2 PANTHER PTHR10165 LIPID PHOSPHATE PHOSPHATASE 68 335 2.5E-88
3 g6763.t2 PANTHER PTHR10165:SF173 FI04477P-RELATED 68 335 2.5E-88
1 g6763.t2 Pfam PF01569 PAP2 superfamily 172 324 2.9E-24
6 g6763.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 67 -
12 g6763.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 68 92 -
10 g6763.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 118 -
15 g6763.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 119 139 -
7 g6763.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 140 242 -
14 g6763.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 243 262 -
9 g6763.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 263 273 -
16 g6763.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 274 292 -
8 g6763.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 293 303 -
13 g6763.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 304 323 -
11 g6763.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 324 351 -
22 g6763.t2 SMART SM00014 acid_phosph_2 169 319 3.1E-29
4 g6763.t2 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 72 329 8.37E-26
21 g6763.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 69 91 -
19 g6763.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 118 135 -
18 g6763.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 273 291 -
20 g6763.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 301 323 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042577 lipid phosphatase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values