General information for g6767.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6767 is located on chr_2: 18541523..18543877 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6767 | g6767.t23 | isoform | g6767.t23 | 18541027 | 18541940 |
| chr_2 | g6767 | g6767.t23 | exon | g6767.t23.exon1 | 18541027 | 18541114 |
| chr_2 | g6767 | g6767.t23 | exon | g6767.t23.exon2 | 18541192 | 18541377 |
| chr_2 | g6767 | g6767.t23 | cds | g6767.t23.CDS1 | 18541233 | 18541377 |
| chr_2 | g6767 | g6767.t23 | exon | g6767.t23.exon3 | 18541447 | 18541940 |
| chr_2 | g6767 | g6767.t23 | cds | g6767.t23.CDS2 | 18541447 | 18541571 |
| chr_2 | g6767 | g6767.t23 | TTS | g6767.t23 | 18541941 | 18541941 |
| chr_2 | g6767 | g6767.t23 | TSS | g6767.t23 | NA | NA |
Sequences
>g6767.t23 Gene=g6767 Length=768
TCTGACTCGGATATTAATGAATTGTTCCAAGAATTTGGACCTTTAAAAGCTGCATCCGTT
CACTATGACCGTTCCGGCAGATCTCTTGCAGATGTTATTTTTGAACGCCGTAACGACGCT
TTAAAGGCTATGAAAACATACAATGGCGTGCCTCTTGATGGACGGCCTATGAACATATTG
ATGGCTACTTCAGAAATTGCATCAGCAAGAGTGCAAAGAGTACCAAGTTTTTCAACTAAT
AAAGGAGGAGCTCGTTCACCACGCAAACCAATAGCTGGAAGAAAACCATTCAAACGAAAT
TTTGCGGGAGGAGCACAAAAGCGTGGTGGTGGAAAAAAACCAGAAGTCACCATTGATCAA
TTAAATGCTGAACTTGATGCGTATACAATGCAATCATAAATAGTATCAGTTTTTGACCCT
ACACTGTGAATTAGAATTATATATATATCAACAGTGTATGAAATGGATAATATTATAAAT
AATAAGAATTATAAAAAAAAATTGTGACATTTAATTTTGAAAACAATTCTCTTTATGAGT
TAAGAAGTAAGCTGCAACAATAACAGCTTTCATTGATTTTAATTTGTAAGCTTTTTCTCA
TCTTCTCTCAAATTTTTTAAGTTGAAAAAATAAACCAAAATTCAGAAATACATATGACGA
TATTAAAAAATTTTCTTTAACATCATAACTATAAAACAATACTGATAAATTGTTAAAGAA
AGAAGAATTGTGGAATAAAAATTATAAAAAATATTTTTTTCTGAAAAT
>g6767.t23 Gene=g6767 Length=89
MKTYNGVPLDGRPMNILMATSEIASARVQRVPSFSTNKGGARSPRKPIAGRKPFKRNFAG
GAQKRGGGKKPEVTIDQLNAELDAYTMQS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6767.t23 | MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 53 | - |
| 1 | g6767.t23 | Pfam | PF13865 | C-terminal duplication domain of Friend of PRMT1 | 38 | 87 | 7.3E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed