General information for g6783.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Indole-3-acetaldehyde oxidase.
Parent gene
- The parent gene g6783 is located on chr_2: 18590081..18593606 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6783 | g6783.t2 | TTS | g6783.t2 | 18589994 | 18589994 |
| chr_2 | g6783 | g6783.t2 | isoform | g6783.t2 | 18590081 | 18593346 |
| chr_2 | g6783 | g6783.t2 | exon | g6783.t2.exon1 | 18590081 | 18590308 |
| chr_2 | g6783 | g6783.t2 | cds | g6783.t2.CDS1 | 18590267 | 18590308 |
| chr_2 | g6783 | g6783.t2 | exon | g6783.t2.exon2 | 18592377 | 18593346 |
| chr_2 | g6783 | g6783.t2 | cds | g6783.t2.CDS2 | 18592377 | 18593135 |
| chr_2 | g6783 | g6783.t2 | TSS | g6783.t2 | NA | NA |
Sequences
>g6783.t2 Gene=g6783 Length=1198
TTTACACTATCATAATGAAATTTTCAAAATTTTTGAAACTATTGGAGAGAAACCATATAT
TTTGATTGGAGGCAACACAGCTCATGGTGTATATCGTCGATCAACAGATTTGAAAGTTTT
CGTTGATATTTCAAGTGTTGAAGAGTTGAAAGCTTACCAAGTTACTGAGAATTCATTAGA
AATTGGTGGGGCAGTAACTTTAACTGAAGCAATGGAGATTTTTACAAAAGTTGCAAATGA
AAATAAAAATTTTCAATATTTGCATGAAATCGTCAAACATTTTGATTTGATAGCTAATGT
ACCAGTGCGAAATAATGGAACGCTTGCTGGAAATTTAATGATAAAAAATGCACACAACGA
ATTTCCTTCTGATATTTTCATTTGTTTTGAAGCTATTGGTACAATGATCAATATTTGGGA
TGGTTCAAAAAATGAGATTCAAATAAGTTTGAATCATTTTATTTCTACAGATATGAATAA
GAAAGTTTTGACTAAAATTACATTGCCAGCAATTGATCCAGTTAAATTCTTTTATCGCTC
TTATAAAATAATGCCTCGAGCTCAAAACGCACATGCATATGTCAATGCAATTTTTGTGCA
ATTGAATGACTCGAAAGTTATTTCAGCTAAAATTTGCTTTGGTGGTATTGATCCTAAATT
TGTACATGCTACAAACACTGAAACATTCTTGATTGGTGAAAATCTTTTTGAGAACAGCAC
TTTACAGCGTGCTTTAGCAATATTAAATGATGAACTTAAACCAGACTGGGTTCTACCTGA
TGCTTCACCAGAATATCGTAAAAATCTTGCTCTTGCACTTTTCTATAAATTTATTCTTAA
TATTGCACCAAATGAAAAAGTGGTTGCAAAATTCAAAAGTGGTGGAGAAATTCTTAAACG
TGATTTATCATCAGGCACTCAAACTTTTGACACATATAAACAAAACTGGCCTCTTACCAA
AAATATTCCTTCAAAAATTGTTTTCACTTTTAATTTTCTTTCAAAATATTAAGCTGTTGG
AGAGCCTCCACTTGTTGCTTCTGTTGTGGTATTATTTGCACTGCGACATGCGCTTGATTC
TGCTCGCAATGACTCTGGTCGAAAAAATGATGAATACTATCAACTAGATGCACCGGCTAC
GAGTGAGAAAATATTTTTGACAGCAAATAACAAACCTGAAATGTTTCTACTCTCTTAA
>g6783.t2 Gene=g6783 Length=266
MEIFTKVANENKNFQYLHEIVKHFDLIANVPVRNNGTLAGNLMIKNAHNEFPSDIFICFE
AIGTMINIWDGSKNEIQISLNHFISTDMNKKVLTKITLPAIDPVKFFYRSYKIMPRAQNA
HAYVNAIFVQLNDSKVISAKICFGGIDPKFVHATNTETFLIGENLFENSTLQRALAILND
ELKPDWVLPDASPEYRKNLALALFYKFILNIAPNEKVVAKFKSGGEILKRDLSSGTQTFD
TYKQNWPLTKNIPSKIVFTFNFLSKY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6783.t2 | Gene3D | G3DSA:3.30.465.10 | - | 1 | 100 | 0.000 |
| 9 | g6783.t2 | Gene3D | G3DSA:3.30.390.50 | - | 105 | 215 | 0.000 |
| 3 | g6783.t2 | PANTHER | PTHR11908:SF132 | ALDEHYDE OXIDASE 1-RELATED | 28 | 253 | 0.000 |
| 4 | g6783.t2 | PANTHER | PTHR11908 | XANTHINE DEHYDROGENASE | 28 | 253 | 0.000 |
| 1 | g6783.t2 | Pfam | PF00941 | FAD binding domain in molybdopterin dehydrogenase | 6 | 100 | 0.000 |
| 2 | g6783.t2 | Pfam | PF03450 | CO dehydrogenase flavoprotein C-terminal domain | 109 | 210 | 0.000 |
| 10 | g6783.t2 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 1 | 103 | 11.425 |
| 7 | g6783.t2 | SMART | SM01092 | CO_deh_flav_C_2 | 109 | 211 | 0.000 |
| 6 | g6783.t2 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 5 | 100 | 0.000 |
| 5 | g6783.t2 | SUPERFAMILY | SSF55447 | CO dehydrogenase flavoprotein C-terminal domain-like | 106 | 214 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed