General information for g6783.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Indole-3-acetaldehyde oxidase.
Parent gene
- The parent gene g6783 is located on chr_2: 18590081..18593606 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6783 | g6783.t3 | TTS | g6783.t3 | 18589994 | 18589994 |
| chr_2 | g6783 | g6783.t3 | isoform | g6783.t3 | 18590081 | 18593606 |
| chr_2 | g6783 | g6783.t3 | exon | g6783.t3.exon1 | 18590081 | 18590308 |
| chr_2 | g6783 | g6783.t3 | exon | g6783.t3.exon2 | 18591560 | 18591894 |
| chr_2 | g6783 | g6783.t3 | exon | g6783.t3.exon3 | 18591971 | 18592171 |
| chr_2 | g6783 | g6783.t3 | exon | g6783.t3.exon4 | 18592233 | 18592383 |
| chr_2 | g6783 | g6783.t3 | cds | g6783.t3.CDS1 | 18592331 | 18592383 |
| chr_2 | g6783 | g6783.t3 | exon | g6783.t3.exon5 | 18592448 | 18593606 |
| chr_2 | g6783 | g6783.t3 | cds | g6783.t3.CDS2 | 18592448 | 18593135 |
| chr_2 | g6783 | g6783.t3 | TSS | g6783.t3 | NA | NA |
Sequences
>g6783.t3 Gene=g6783 Length=2074
ATGGAAGAAGTTGAGAATTCGTTTGGTGGAAATATATGCAGATGTACTGGTTATCGACCA
ATTTTAGATGCATTCAAATCACTTGCAATTGATGCTGATAAGAATCTTTTGGATGCATGC
AAGGACATTGAAGATTTAAGTGATATTAAAATGTGTCCAAAATCAGGAAATCCTTGTTCT
GGCCAAATGCAGTTCATTGTTGAATATTGAAAAAAATCCAATGAGCTTCACTTTTGATGA
TGAACGCGAGTTCCACAAAGTTTACACTATCATAATGAAATTTTCAAAATTTTTGAAACT
ATTGGAGAGAAACCATATATTTTGATTGGAGGCAACACAGCTCATGGTGTATATCGTCGA
TCAACAGATTTGAAAGTTTTCGTTGATATTTCAAGTGTTGAAGAGTTGAAAGCTTACCAA
GTTACTGAGAATTCATTAGAAATTGGTGGGGCAGTAACTTTAACTGAAGCAATGGAGATT
TTTACAAAAGTTGCAAATGAAAATAAAAATTTTCAATATTTGCATGAAATCGTCAAACAT
TTTGATTTGATAGCTAATGTACCAGTGCGAAATAATGGAACGCTTGCTGGAAATTTAATG
ATAAAAAATGCACACAACGAATTTCCTTCTGATATTTTCATTTGTTTTGAAGCTATTGGT
ACAATGATCAATATTTGGGATGGTTCAAAAAATGAGATTCAAATAAGTTTGAATCATTTT
ATTTCTACAGATATGAATAAGAAAGTTTTGACTAAAATTACATTGCCAGCAATTGATCCA
GTTAAATTCTTTTATCGCTCTTATAAAATAATGCCTCGAGCTCAAAACGCACATGCATAT
GTCAATGCAATTTTTGTGCAATTGAATGACTCGAAAGTTATTTCAGCTAAAATTTGCTTT
GGTGGTATTGATCCTAAATTTGTACATGCTACAAACACTGAAACATTCTTGATTGGTGAA
AATCTTTTTGAGAACAGCACTTTACAGCGTGCTTTAGCAATATTAAATGATGAACTTAAA
CCAGACTGGGTTCTACCTGATGCTTCACCAGAATATCGTAAAAATCTTGCTCTTGCACTT
TTCTATAAATTTATTCTTAATATTGCACCAAATGAAAAAGTGGTTGCAAAATTCAAAAGT
GGTGGAGAAATTCTTAAACTATTCCTAAAATTGAAGCAGATATTCAATGTACTGGTGAAG
CTAAATATATAAATGACCATCCACCACTTCCAAATGAACTTCATGCTGCTTTCGTGACCG
CAAAGAATGTTCATGGAGAGATTTTAAATATTGATGCTAGCAAAGCTTTGAAAATGCCAG
GTGTAGTTGCATTCTTTTCAGCAAAAGACATTCCAGGTACAAATACATTCATGCCACCAA
ACTATTTATTTGTTTCGGAACCAGAAGAGATTTTTTGCAGTTCAAAAGTACTTTTTTATA
ATCAACCTGTTGGTGTCATTGTAGCAAAGACCTTCGAATTAGCAAATAAAGCTGCAGACA
TGATTACTATTTAATATGTCCTGAGTACAGTGTAGAAGGACAACAAGGTGACAATATTCA
ACACTCAGAAAGCATTACCGGTAATTTCCATTTCGATTCGCAATACCATTACACTATGGA
AACGCAATCATGCTTATGCATTCCTATTGAAGACGGAATTGATGTTTATTCTTCAACACA
ATGGATGGATGCAACACAAATTGCTGTTGCGGAAACTCTCTTGTTGCCAAATAATGCAGT
AAACATGAAAGTTCGCCGACTAGGTGGTGGCTTTGGCTCAAAAATTTCACGACCAGCACA
AATTGCTTGTGCTTCAGCTCTTGCTGCTTATTTATTGAATCGACCTTCAAAAATTGTTTT
CACTTTTAATTTTCTTTCAAAATATTAAGCTGTTGGAGAGCCTCCACTTGTTGCTTCTGT
TGTGGTATTATTTGCACTGCGACATGCGCTTGATTCTGCTCGCAATGACTCTGGTCGAAA
AAATGATGAATACTATCAACTAGATGCACCGGCTACGAGTGAGAAAATATTTTTGACAGC
AAATAACAAACCTGAAATGTTTCTACTCTCTTAA
>g6783.t3 Gene=g6783 Length=246
MEIFTKVANENKNFQYLHEIVKHFDLIANVPVRNNGTLAGNLMIKNAHNEFPSDIFICFE
AIGTMINIWDGSKNEIQISLNHFISTDMNKKVLTKITLPAIDPVKFFYRSYKIMPRAQNA
HAYVNAIFVQLNDSKVISAKICFGGIDPKFVHATNTETFLIGENLFENSTLQRALAILND
ELKPDWVLPDASPEYRKNLALALFYKFILNIAPNEKVVAKFKSGGEILKLFLKLKQIFNV
LVKLNI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6783.t3 | Gene3D | G3DSA:3.30.465.10 | - | 1 | 100 | 0.000 |
| 9 | g6783.t3 | Gene3D | G3DSA:3.30.390.50 | - | 105 | 215 | 0.000 |
| 3 | g6783.t3 | PANTHER | PTHR11908:SF132 | ALDEHYDE OXIDASE 1-RELATED | 28 | 219 | 0.000 |
| 4 | g6783.t3 | PANTHER | PTHR11908 | XANTHINE DEHYDROGENASE | 28 | 219 | 0.000 |
| 1 | g6783.t3 | Pfam | PF00941 | FAD binding domain in molybdopterin dehydrogenase | 6 | 100 | 0.000 |
| 2 | g6783.t3 | Pfam | PF03450 | CO dehydrogenase flavoprotein C-terminal domain | 109 | 210 | 0.000 |
| 10 | g6783.t3 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 1 | 103 | 11.425 |
| 7 | g6783.t3 | SMART | SM01092 | CO_deh_flav_C_2 | 109 | 211 | 0.000 |
| 6 | g6783.t3 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 5 | 100 | 0.000 |
| 5 | g6783.t3 | SUPERFAMILY | SSF55447 | CO dehydrogenase flavoprotein C-terminal domain-like | 106 | 214 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
