General information for g6786.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Xanthine dehydrogenase.
Parent gene
- The parent gene g6786 is located on chr_2: 18604483..18606466 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6786 | g6786.t5 | TSS | g6786.t5 | 18601649 | 18601649 |
| chr_2 | g6786 | g6786.t5 | isoform | g6786.t5 | 18602514 | 18603033 |
| chr_2 | g6786 | g6786.t5 | exon | g6786.t5.exon1 | 18602514 | 18603033 |
| chr_2 | g6786 | g6786.t5 | cds | g6786.t5.CDS1 | 18602589 | 18603032 |
| chr_2 | g6786 | g6786.t5 | TTS | g6786.t5 | NA | NA |
Sequences
>g6786.t5 Gene=g6786 Length=520
TGTCTTCAAAATATCTATTCATGTCATGGTCTTGATATCATAACTGTTGAAGGAATTGGT
AGCAAAAAGGATGGCATGCATAAAATTCAAAAACGATTGGCTGATTTTAATGGAACTCAA
TGTGGATTTTGTACTCCTGGGATGGTCATGAATATGTTTTCATTGATGGAAGCGAAAAAT
GGAAAAGTGACAATGGAAGAAGTTGAGAATTCGTTTGGTGGAAATATATGCAGATGCACT
GGTTATCGACCAATTTTAGATGCATTCAAATCACTTGCAATTGATGCTGATAAGAATCTT
TTGGATGCATGCAAGGACATTGAAGATTTGAGTGATATTAAAATGTGTCCAAAATCAGGA
AATCCTTGTTCTGGCAAATGCAGTTCATTGTTGAATATTGAAAAAAATCCAATGAGCTTC
ACTTTTGATGATGAACGCGAGTTTCACAAAGTTTATAATTTAGAACAACTTTTTAAGATA
ATGGGAACAATAAAATATCGTCCATACATTTTGATTGGAG
>g6786.t5 Gene=g6786 Length=148
MHKIQKRLADFNGTQCGFCTPGMVMNMFSLMEAKNGKVTMEEVENSFGGNICRCTGYRPI
LDAFKSLAIDADKNLLDACKDIEDLSDIKMCPKSGNPCSGKCSSLLNIEKNPMSFTFDDE
REFHKVYNLEQLFKIMGTIKYRPYILIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6786.t5 | Gene3D | G3DSA:3.30.365.10 | Aldehyde Oxidoreductase; domain 4 | 1 | 147 | 0 |
| 2 | g6786.t5 | PANTHER | PTHR11908:SF132 | ALDEHYDE OXIDASE 1-RELATED | 1 | 139 | 0 |
| 3 | g6786.t5 | PANTHER | PTHR11908 | XANTHINE DEHYDROGENASE | 1 | 139 | 0 |
| 1 | g6786.t5 | Pfam | PF01799 | [2Fe-2S] binding domain | 2 | 64 | 0 |
| 4 | g6786.t5 | SUPERFAMILY | SSF47741 | CO dehydrogenase ISP C-domain like | 2 | 89 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed