General information for g6786.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Xanthine dehydrogenase/oxidase.
Parent gene
- The parent gene g6786 is located on chr_2: 18604483..18606466 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6786 | g6786.t6 | isoform | g6786.t6 | 18604483 | 18606466 |
| chr_2 | g6786 | g6786.t6 | exon | g6786.t6.exon1 | 18604483 | 18604797 |
| chr_2 | g6786 | g6786.t6 | exon | g6786.t6.exon2 | 18604861 | 18605410 |
| chr_2 | g6786 | g6786.t6 | cds | g6786.t6.CDS1 | 18605251 | 18605410 |
| chr_2 | g6786 | g6786.t6 | exon | g6786.t6.exon3 | 18605475 | 18606466 |
| chr_2 | g6786 | g6786.t6 | cds | g6786.t6.CDS2 | 18605475 | 18606466 |
| chr_2 | g6786 | g6786.t6 | TTS | g6786.t6 | 18606898 | 18606898 |
| chr_2 | g6786 | g6786.t6 | TSS | g6786.t6 | NA | NA |
Sequences
>g6786.t6 Gene=g6786 Length=1857
ATGAACCAATTTATCCAACAATACGAGAAGTTTATAAGGCAAAAGCTTCTGATCGTTTGA
TAGATATTCCAAAGTATTTTATACAAGCTGAAAAATGTGGAACTGACAGAAAACACAAAA
TTAAAGGACATTTTGAAATGGCATCAACACAATATCATCATTATATGGAAACACAACAAT
GTGTTTGTATTCCAAGTGAGGATGGAATGGATATTTATTCTTCTTCACAATGGACAGATA
CTGCACATGTTGCTGTTGCTGAAATGTTGAAAGTTCCTCAAAACACTTTGAATTTCTTTG
TTCGTAGAATTGGCGGAGCATTTGGTGGTAAAATTTCAAGACATGCTCAAATTGCATGTG
CGGCTGCATTAGGTTGTTATTTAACTAGAAAACCAGTTCGATTGATTATGACCATGGAAG
ATAATATGAGAGCAATTGGAAAGAGATTTTCAGCTATTAGTGATTATGATGTTGAATTTG
ATGATACAGGAAAAATCCAAAAATTGCATCATCATTATATTCAAGATCAAGGATGTTCTT
TGAATGAACCAGGTAAGATTTCAATTGATAAAAAATAAATTTTAAAACATCAAATTTTTT
TCAGTTCAATTTAACACATCAGTCTTTATTAAAAACTGTTACAATATTGAATCTTGGGAT
GTCACTACACAAAGCGCTTTATCACATTCAGCGTCAAATACTTGGATGAGAGCTCCAGGA
ACTACTGAAGCAATTGCTATGACAGAACATGTTATGGAACACATTGCAAGAACACTTGGA
AAAGATCCAGTAGATGTAAGAATGGCAAATTTAACTGAAGACAGCGTGTTTAAAACAATG
ATGCCTGAATTTGTTTCAAACGTTGAATATAAACAACGAAAGGCAGAAATTGATAAATTT
AATTCATTAAATAGATGGACAAAGCGCGGAATCGCAATTGTCCCTATGAAATATTATATT
TTTTGTGTAGGCACTATGCATGGAACAGTTTCAATTTATCATGGTGATGGCACAATTGCT
TTAAGTACAGGTGGCATTGAAATGGGACAAGGCCTTAATACTAAGATCATTCAAGTTGCA
TCACATATTCTTAATCTTCCAATCGATAAGTTTGTCATCAAACCATCAAATACACTAAAT
AATGCAAACGATGTTGGAACTGTTGCTAGCGTAACTTCAGAAATTTCATGCTTTGTTATC
AAAAACTGTTGTGAAATGCTACTCGAACGGTTGAAACCAATTAAAGATGAAAATCCAGAT
GCAACTTGGGAAAAAATAGTGGACATTGCTTTTAAGAAAAATATTGACTTGTCAGTTACT
TTTATGTACAAGGAAGAAGATATGGTGCCATATTATGTTTATGGATTAAGTTGTGCTGAA
GTTGAAGTTGATTTTCTTACTGGAAATATGTTATTAAAAAGAGTGGATATTTTAGAAGAC
ACTGGCGAAAGCATGAGTCCTGGAATTGATATTGGACAAATTGAAGGAGGATTTGTTATT
GGATTAGGTATATGGCTAACTGAGAATTTAGTGTATGATCAAAAAACAGCAGAATTATTG
ACTGATCGCTCATTTAATTATAAACCACCTGGTGCTCAAGATATTCCTGTAGATTTCCGT
ATAAAACTTGTTCAAAAATCACCAAATAAATTCTTTGTGTTGAGAAGTAAAGCATGTAGT
GAACCACCAGTAACAATGGCAGTTGTAGTTAGTTTTGCATTACGTTATGCAATCGATGCA
GCTCGACGTGATAATGGCCTTAAAGATTCAGATTGGTATACATTAGAAGCACCAGTTAGT
CCTGACAAAATCTTTTTGATGGCCAATAACAAAATCCAAGACTATAAATTAAATTAA
>g6786.t6 Gene=g6786 Length=383
MRAPGTTEAIAMTEHVMEHIARTLGKDPVDVRMANLTEDSVFKTMMPEFVSNVEYKQRKA
EIDKFNSLNRWTKRGIAIVPMKYYIFCVGTMHGTVSIYHGDGTIALSTGGIEMGQGLNTK
IIQVASHILNLPIDKFVIKPSNTLNNANDVGTVASVTSEISCFVIKNCCEMLLERLKPIK
DENPDATWEKIVDIAFKKNIDLSVTFMYKEEDMVPYYVYGLSCAEVEVDFLTGNMLLKRV
DILEDTGESMSPGIDIGQIEGGFVIGLGIWLTENLVYDQKTAELLTDRSFNYKPPGAQDI
PVDFRIKLVQKSPNKFFVLRSKACSEPPVTMAVVVSFALRYAIDAARRDNGLKDSDWYTL
EAPVSPDKIFLMANNKIQDYKLN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6786.t6 | Gene3D | G3DSA:3.30.365.10 | Aldehyde Oxidoreductase; domain 4 | 1 | 40 | 0 |
| 6 | g6786.t6 | Gene3D | G3DSA:3.30.365.10 | Aldehyde Oxidoreductase; domain 4 | 41 | 369 | 0 |
| 5 | g6786.t6 | Gene3D | G3DSA:3.30.365.10 | Aldehyde Oxidoreductase; domain 4 | 88 | 213 | 0 |
| 2 | g6786.t6 | PANTHER | PTHR11908:SF132 | ALDEHYDE OXIDASE 1-RELATED | 1 | 382 | 0 |
| 3 | g6786.t6 | PANTHER | PTHR11908 | XANTHINE DEHYDROGENASE | 1 | 382 | 0 |
| 1 | g6786.t6 | Pfam | PF02738 | Molybdopterin-binding domain of aldehyde dehydrogenase | 1 | 301 | 0 |
| 4 | g6786.t6 | SUPERFAMILY | SSF56003 | Molybdenum cofactor-binding domain | 1 | 376 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
