General information for g6796.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein bric-a-brac 1.
Parent gene
- The parent gene g6796 is located on chr_2: 18770108..18771279 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6796 | g6796.t1 | isoform | g6796.t1 | 18770108 | 18771279 |
| chr_2 | g6796 | g6796.t1 | exon | g6796.t1.exon1 | 18770108 | 18770488 |
| chr_2 | g6796 | g6796.t1 | cds | g6796.t1.CDS1 | 18770108 | 18770488 |
| chr_2 | g6796 | g6796.t1 | exon | g6796.t1.exon2 | 18770563 | 18771279 |
| chr_2 | g6796 | g6796.t1 | cds | g6796.t1.CDS2 | 18770563 | 18771279 |
| chr_2 | g6796 | g6796.t1 | TSS | g6796.t1 | NA | NA |
| chr_2 | g6796 | g6796.t1 | TTS | g6796.t1 | NA | NA |
Sequences
>g6796.t1 Gene=g6796 Length=1098
ATGTGGCAAAAATGCTGGAATAGTCAAAATCTTGTCCAACATATGAGATTTCGTGAACGA
GGTCCTTTAAAATCTTGGCGACCAGAAACAATGGCAGAGGCTATTTTCAGTGTTCTTAAA
GAAGGTCTGTCATTATCACAGGCAGCACGTAAATATGATATTCCGTATCCGACATTTGTA
CTTTATGCAAATCGCGTTCATAACATGCTGGGACCATCAATGGATGGCGGAAGTGATCTT
AGACCAAAGGGCCGTGGCAGACCGCAGCGAATTCTCCTCGGAATCTGGCCTGATGAGCAC
ATCAAAGGCGTAATTAAAAGTGTAGTGTTTCGCGATGAAAAAAATCTAAAGGAAGAGCAA
ATGATCTATGGAAGGCAGTCGCCGTTTCCATTTCAAGACGCGCAACTAGGTTATCCTAAT
GGTTTGAACGCACAAGCAGCTGAGTCAATGTCACCTGACCTTCTTGCTGCTGTACGTCAG
CAAATGTGCAATATGGTTGATGCTGCAAATTTTGTTGCTGGTTTCAATCTTCCTCCAAAT
ATGTCAATGGCACCGAGTTTGGGTGGTAATTTGAACAGTAATATACCAAATCCAAAAGTT
GGTTCACCCGCAATGGGTTGTAATCAATTAAATAAAAATGGTGGTGAACCGAGTAATGCA
ATATTGCAAATGCCACGTCTTGGATCACCTGCTCTTCATCTACCAACAGAATTATCAATG
CATGGTCACCTCTCCCCGAATGATGAAAACAACGATTCACGTAAAAAAGACAAACGTATG
CGAAAGTCAATAGATGAAGATGTAGAAGATCAACAACAACAGCAAAAGAGCGGCTTAAAT
AACAATCGATTGAGCATAACGAAAATGAACTCACCGAAAAGTAAGACTCCATCAATCGAC
GCATTAGAGCCGGCCGTAAATTTAGCGATTAGCGGACAAACACTCGACATGTCCTATAAA
TCATCCCGAAATAGCAGCGATAGTAGTAGTGTCAATGGTGATGAAATTACACGATCATTT
CGCAACGTCGCTGTGAATCTCGGCTTCAAAGACTCATCGCCAATTAAATTAGAGCCGCTT
GCCGATTGTCGCGAATAA
>g6796.t1 Gene=g6796 Length=365
MWQKCWNSQNLVQHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFV
LYANRVHNMLGPSMDGGSDLRPKGRGRPQRILLGIWPDEHIKGVIKSVVFRDEKNLKEEQ
MIYGRQSPFPFQDAQLGYPNGLNAQAAESMSPDLLAAVRQQMCNMVDAANFVAGFNLPPN
MSMAPSLGGNLNSNIPNPKVGSPAMGCNQLNKNGGEPSNAILQMPRLGSPALHLPTELSM
HGHLSPNDENNDSRKKDKRMRKSIDEDVEDQQQQQKSGLNNNRLSITKMNSPKSKTPSID
ALEPAVNLAISGQTLDMSYKSSRNSSDSSSVNGDEITRSFRNVAVNLGFKDSSPIKLEPL
ADCRE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6796.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 299 | - |
| 7 | g6796.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 272 | - |
| 5 | g6796.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 297 | - |
| 2 | g6796.t1 | PANTHER | PTHR23110:SF95 | LONGITUDINALS LACKING PROTEIN-LIKE-RELATED | 72 | 289 | 3.9E-21 |
| 3 | g6796.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 72 | 289 | 3.9E-21 |
| 1 | g6796.t1 | Pfam | PF05225 | helix-turn-helix, Psq domain | 27 | 70 | 3.0E-14 |
| 8 | g6796.t1 | ProSiteProfiles | PS50960 | Psq-type HTH domain profile. | 17 | 69 | 18.56 |
| 4 | g6796.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 21 | 71 | 4.3E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
