General information for g6814.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol monophosphatase 1.
Parent gene
- The parent gene g6814 is located on chr_2: 18878299..18879188 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6814 | g6814.t1 | TSS | g6814.t1 | 18876103 | 18876103 |
| chr_2 | g6814 | g6814.t1 | isoform | g6814.t1 | 18876344 | 18878907 |
| chr_2 | g6814 | g6814.t1 | exon | g6814.t1.exon1 | 18876344 | 18876412 |
| chr_2 | g6814 | g6814.t1 | cds | g6814.t1.CDS1 | 18876344 | 18876412 |
| chr_2 | g6814 | g6814.t1 | exon | g6814.t1.exon2 | 18878299 | 18878362 |
| chr_2 | g6814 | g6814.t1 | cds | g6814.t1.CDS2 | 18878299 | 18878362 |
| chr_2 | g6814 | g6814.t1 | exon | g6814.t1.exon3 | 18878441 | 18878907 |
| chr_2 | g6814 | g6814.t1 | cds | g6814.t1.CDS3 | 18878441 | 18878907 |
| chr_2 | g6814 | g6814.t1 | TTS | g6814.t1 | 18879207 | 18879207 |
Sequences
>g6814.t1 Gene=g6814 Length=600
ATGGCATCATCTGCAGAGTTGGATTCCTATTATGAACTTATTATGCAATTGGTTGATGAA
GCTGGACAACTCATTGTATCAAGAAATTCTCAGAGAAAAACTGTCGAACTTAAATCGAGT
GATATTGATTTTGGAGAAGAAGACTCGAGCGATGGCAAAAAAGCTGTTCTTACTAATGCA
CCGACTTGGATTATTGACCCAGTTGATGGAACGATGAATTTTGTCCATAGCTTTCCACAT
TCTGCAATTTCTGTTGCATTATTAGTCAATAAAATCACAGAAATTGGAATCATCTTCAAT
CCTGTTTTAGGTCAAAAGTTTACAGCAAGAAGAGGTCAAGGTGCATTCTATAATGGCCAG
CAAATAAAAGTTTCGGAGAAAAAGTCACTAGCTAATGCTTTGCTGTTCACTGAATTTGGA
ACAAGTCGTGATGAAGAAAAGACCAAAGTTGTGCTCGAAAATATAACAAAATTAGTTAAA
CTGGCTCATGGTTTTCGTTCACTAGGAGCTGCAGCTCTTAATATTTGCATGGTTGCACTT
GGTGGCGCTGATTGCTATTATGAATATGGTGTTCATGCATGGGACTATGCAGGCAAGTGA
>g6814.t1 Gene=g6814 Length=199
MASSAELDSYYELIMQLVDEAGQLIVSRNSQRKTVELKSSDIDFGEEDSSDGKKAVLTNA
PTWIIDPVDGTMNFVHSFPHSAISVALLVNKITEIGIIFNPVLGQKFTARRGQGAFYNGQ
QIKVSEKKSLANALLFTEFGTSRDEEKTKVVLENITKLVKLAHGFRSLGAAALNICMVAL
GGADCYYEYGVHAWDYAGK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g6814.t1 | CDD | cd01639 | IMPase | 10 | 197 | 1.04546E-77 |
| 9 | g6814.t1 | Gene3D | G3DSA:3.30.540.10 | - | 42 | 122 | 6.4E-26 |
| 10 | g6814.t1 | Gene3D | G3DSA:3.40.190.80 | - | 123 | 199 | 4.6E-21 |
| 2 | g6814.t1 | PANTHER | PTHR20854 | INOSITOL MONOPHOSPHATASE | 45 | 198 | 1.4E-61 |
| 6 | g6814.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 63 | 79 | 7.5E-26 |
| 3 | g6814.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 112 | 135 | 7.5E-26 |
| 5 | g6814.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 160 | 181 | 7.5E-26 |
| 4 | g6814.t1 | PRINTS | PR00377 | Inositol monophosphatase superfamily signature | 191 | 199 | 7.5E-26 |
| 1 | g6814.t1 | Pfam | PF00459 | Inositol monophosphatase family | 18 | 197 | 5.0E-48 |
| 8 | g6814.t1 | ProSitePatterns | PS00629 | Inositol monophosphatase family signature 1. | 63 | 76 | - |
| 7 | g6814.t1 | SUPERFAMILY | SSF56655 | Carbohydrate phosphatase | 7 | 198 | 9.82E-53 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046855 | inositol phosphate dephosphorylation | BP |
| GO:0008934 | inositol monophosphate 1-phosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01092 (myo-inositol-1(or 4)-monophosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
