General information for g6820.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Integrin-linked protein kinase homolog pat-4.
Parent gene
- The parent gene g6820 is located on chr_2: 18946610..18948059 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6820 | g6820.t2 | isoform | g6820.t2 | 18944371 | 18945462 |
| chr_2 | g6820 | g6820.t2 | exon | g6820.t2.exon1 | 18944371 | 18945462 |
| chr_2 | g6820 | g6820.t2 | TTS | g6820.t2 | 18944398 | 18944398 |
| chr_2 | g6820 | g6820.t2 | cds | g6820.t2.CDS1 | 18945079 | 18945432 |
| chr_2 | g6820 | g6820.t2 | TSS | g6820.t2 | NA | NA |
Sequences
>g6820.t2 Gene=g6820 Length=1092
ATCGATGAGGATTTGACAGCACGCATTAATATGGGTGACTGCAAGTTTTCGTTTCAAGAA
CGTGGACGAATTTATCAGCCAGCTTGGATGTCGCCAGAAACTTTACAACGAAAACGTGCC
GATCGAAATTGGGAGGCATGCGATATGTGGAGTTTTTCGATTGTTGTATGGGAATTAATG
ACTCGTGAGATTCCATTTGTCGATTTATCACCAATGGAGTGTGGAATGAGAATTGCGACC
GAGGGTCTTCGAGTTCAAATTCCACCCGGTGCTTCGGCACACTTGTCAAAGTTGATTAAA
ATTTGCATGAATGAGGAGGCAGGAAAACGTCCACGTTTTGATATGGTTATACCAATTTTG
GAGAAAATGGGTGCAAAGTTCTAGGAAACTTATTTAAATTAACTTGTGTTCATACAAAAA
ATCTCAACAATCAGCAATAGAACTAAATCCACACAAAAAATGAATCGAAATAGTGCCAAC
TTAACTCACAATTTTACTTTTAAAGTATTTTTGACAAAAAAAAGCTTTTAATGATAAAGT
GTCCTCTATTAATGTGCCTAAACATGAGAAAAAAATAACTTTTATTGTTGTTGTAGAAAC
TTAATTTTTATGCTGTTACCAGACTTTTAACTAAGTCATTAATTTTGTATTTAGAAACTT
TTTTTAATTGACTCATGTGTGAACATTTTGACAATTTAAAATTAATAATCGACTTATTGT
TTTCAAAAAAATGTCAATTATAAATTATTAAGAAAAATTGACATTTTTGAATAAAAATGA
TTCAATTTATATGCCATGTGTCTTGACATGCCCATGAAGTGAGTCGGGGTTTTTTTTGTT
TTAAGTGCACACATGAGTGATTTTAATAATAATAGAAAATATTTTATATATGCTGGTAAC
ATACTAAAAATCAAATTAGCTTTTTTCTAACATTTACTTAATAATTTTTAATTGATATTA
ATTATTTTTGAATTTTTAACTTTTTAATGATCCATAATTTAATCAATACCGTAAAAAGCT
GAAAATTATTTTTATAAAGAAAAAAATAAATTAACATTTAAAAAATTTGTAAACTTTTTT
GACTCTCATAAA
>g6820.t2 Gene=g6820 Length=117
MGDCKFSFQERGRIYQPAWMSPETLQRKRADRNWEACDMWSFSIVVWELMTREIPFVDLS
PMECGMRIATEGLRVQIPPGASAHLSKLIKICMNEEAGKRPRFDMVIPILEKMGAKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6820.t2 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 115 | 0.000 |
| 2 | g6820.t2 | PANTHER | PTHR23257 | SERINE-THREONINE PROTEIN KINASE | 3 | 107 | 0.000 |
| 3 | g6820.t2 | PANTHER | PTHR23257:SF822 | INTEGRIN-LINKED KINASE | 3 | 107 | 0.000 |
| 1 | g6820.t2 | Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 13 | 108 | 0.000 |
| 6 | g6820.t2 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 110 | 11.114 |
| 4 | g6820.t2 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 108 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
