General information for g6822.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Eukaryotic translation initiation factor 3 subunit E.
Parent gene
- The parent gene g6822 is located on chr_2: 18952658..18953608 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6822 | g6822.t10 | TSS | g6822.t10 | 18952047 | 18952047 |
| chr_2 | g6822 | g6822.t10 | isoform | g6822.t10 | 18952658 | 18953220 |
| chr_2 | g6822 | g6822.t10 | exon | g6822.t10.exon1 | 18952658 | 18953220 |
| chr_2 | g6822 | g6822.t10 | cds | g6822.t10.CDS1 | 18952694 | 18953218 |
| chr_2 | g6822 | g6822.t10 | TTS | g6822.t10 | 18953755 | 18953755 |
Sequences
>g6822.t10 Gene=g6822 Length=563
TATACTGAAACAACATCTTATTTATACATTTGCTTGATGATAATGCAGCCGCATGATAAA
AATTACTTGAATGTTCTTTGGGGAAAGCTTGCTTCTGAAATTCTAACATTGAATTGGCAA
ACTGCTCTTGAAGATTTGAATCGCTTGCGAGAATTTATTGACAATAGCAACTTTACAAAC
ATTCAAGTTTTACAACAAAGAACATGGCTTATTCACTGGAGTGTTCTCGTCTTCTTTAAT
CATCCTAAAGGACGCGATCTTATTATCGAGATGTTCTTATACAAACCACTGTATTTGAAT
GCAATTCAAACTATGTGCCCGCACATACTCCGTTATCTTTCGGTCGCTGTCATTATTAAT
CGTGGCAGACGCAATGCTTTAAAAGATTTGATTAAAGTTATTCAACAAGAATCTTACACA
TATAAAGATCCAATTACAGAATTTCTTGAGCATTTATACGTCAATTTTGATTTTGAAGGT
GCTCGTATGAAATTACATGAGTGTCAAACAGTCATTTTAAATGATTTCTTCATTATTGGC
TGCTTGGATGAATTCGTAGAAAA
>g6822.t10 Gene=g6822 Length=175
MIMQPHDKNYLNVLWGKLASEILTLNWQTALEDLNRLREFIDNSNFTNIQVLQQRTWLIH
WSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHILRYLSVAVIINRGRRNALKDLIK
VIQQESYTYKDPITEFLEHLYVNFDFEGARMKLHECQTVILNDFFIIGCLDEFVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g6822.t10 | PANTHER | PTHR10317 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 5 | 175 | 0 |
| g6822.t10 | PANTHER | PTHR10317:SF3 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 5 | 175 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003743 | translation initiation factor activity | MF |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | CC |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed