General information for g6829.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 2-aminoethanethiol dioxygenase.
Parent gene
- The parent gene g6829 is located on chr_2: 18983261..18984257 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6829 | g6829.t2 | TSS | g6829.t2 | 18982437 | 18982437 |
| chr_2 | g6829 | g6829.t2 | isoform | g6829.t2 | 18982511 | 18983261 |
| chr_2 | g6829 | g6829.t2 | exon | g6829.t2.exon1 | 18982511 | 18982678 |
| chr_2 | g6829 | g6829.t2 | cds | g6829.t2.CDS1 | 18982511 | 18982678 |
| chr_2 | g6829 | g6829.t2 | exon | g6829.t2.exon2 | 18982755 | 18983261 |
| chr_2 | g6829 | g6829.t2 | cds | g6829.t2.CDS2 | 18982755 | 18983261 |
| chr_2 | g6829 | g6829.t2 | TTS | g6829.t2 | 18983503 | 18983503 |
Sequences
>g6829.t2 Gene=g6829 Length=675
ATGTCTTCTGTGCTTGCAAAAATATTCAATCAAGCAGAGATTACATTCTCAATTCGCAAT
AGTGATGCATACAAACAAAATTTTATGTTGTTGAAGAAATTAGTCGATAGTTTAGTATTC
AGTGATTTAAATCTGAATCCAATTCTATTTAGTAAGGCAGCTTTTCAAAATAAAGCACCT
TGCACTTTTATTAATTTATATGAGAAGCAAAACAGCACATTCTCCATGTCAATTTTTATA
ATGAATGGAAATTATAAAATGCCACTTCATGATCATCCAAATATGTGTGGGCTTTTAAGA
GTAATAAGTGGTCAAATAAAAGTAGAGAGCTACACGCGAATAAAAAGTGATATAGAAGAT
GAAATTCTTGTAAAAGCAGAAGAGCCAAAAATTTTAGACGAATTGAGTGCATCGGCTGTG
TTATTTCCTGAAAACTCGAATTTTCACGAAATAACTGCATTGAATGAACCTGCAGCATTT
TTTGATATTTTAGCTCCACCTTATAGTGACTATAACGACTCAATGGAACCCGGATCCAGG
CATTGCTCTTTTTATAAAAAAATAATGTTTGAAAATTGCGGCAAAAGTCCGATACTAAAA
TTAGTGAAAATCGATGTACCAGATCATTATTATTGTGACTCTGTTGCTTATAAGCAGCCA
GATTTCATGCGATAA
>g6829.t2 Gene=g6829 Length=224
MSSVLAKIFNQAEITFSIRNSDAYKQNFMLLKKLVDSLVFSDLNLNPILFSKAAFQNKAP
CTFINLYEKQNSTFSMSIFIMNGNYKMPLHDHPNMCGLLRVISGQIKVESYTRIKSDIED
EILVKAEEPKILDELSASAVLFPENSNFHEITALNEPAAFFDILAPPYSDYNDSMEPGSR
HCSFYKKIMFENCGKSPILKLVKIDVPDHYYCDSVAYKQPDFMR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6829.t2 | CDD | cd20289 | cupin_ADO | 72 | 169 | 0 |
| 5 | g6829.t2 | Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 51 | 186 | 0 |
| 2 | g6829.t2 | PANTHER | PTHR22966:SF29 | 2-AMINOETHANETHIOL DIOXYGENASE | 3 | 221 | 0 |
| 3 | g6829.t2 | PANTHER | PTHR22966 | UNCHARACTERIZED | 3 | 221 | 0 |
| 1 | g6829.t2 | Pfam | PF07847 | PCO_ADO | 35 | 221 | 0 |
| 4 | g6829.t2 | SUPERFAMILY | SSF51182 | RmlC-like cupins | 27 | 169 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
- This transcript has been annotated with K10712 (cysteamine dioxygenase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
