General information for g6841.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium/potassium-transporting ATPase subunit beta-2.
Parent gene
- The parent gene g6841 is located on chr_2: 19029725..19030319 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6841 | g6841.t3 | TTS | g6841.t3 | 19024410 | 19024410 |
| chr_2 | g6841 | g6841.t3 | isoform | g6841.t3 | 19024633 | 19026356 |
| chr_2 | g6841 | g6841.t3 | exon | g6841.t3.exon1 | 19024633 | 19025519 |
| chr_2 | g6841 | g6841.t3 | cds | g6841.t3.CDS1 | 19025389 | 19025519 |
| chr_2 | g6841 | g6841.t3 | exon | g6841.t3.exon2 | 19025580 | 19026029 |
| chr_2 | g6841 | g6841.t3 | cds | g6841.t3.CDS2 | 19025580 | 19026029 |
| chr_2 | g6841 | g6841.t3 | exon | g6841.t3.exon3 | 19026096 | 19026356 |
| chr_2 | g6841 | g6841.t3 | cds | g6841.t3.CDS3 | 19026096 | 19026297 |
| chr_2 | g6841 | g6841.t3 | TSS | g6841.t3 | NA | NA |
Sequences
>g6841.t3 Gene=g6841 Length=1598
TGCGTATCCTCATCTTTTACATCATTTTCTACATCGTATTGGCCATTTTCTTTGTAACAA
TGTTTTTCATATTTGGTTCAACATTGACAAAAGAGCGACCAAAATATGAGCTAAAAGAGA
GTCTGATTGGCACAAATCCAGGTTTAGGTTTTCGACCAATGCCCCCAGAAAGTAACGTTG
AAAGTACATTAATTTGGTATCAAAAGGACAATCCAGATAATTCTAAATATTGGGTTGAGG
AGATTGATCGTTTTTTAGAAGGTTTCAAGGGCAACAGTACAGATCGTGTCGATTGTAGAA
ACTCTCCACCAGAAGTAGGCAAAATCTGTAATGTTAATCTTGATGCTTTTAAACCATGCA
TTTCTAAAGAAAATTATGGTTATGAGCAAGGAAGACCGTGCATCTTTTTAAAGCTCAATA
AAATTTACAATTGGGAGCCAGAATATTATAACAATTCAAAACAATTAGCTGAAAATATGC
CAAAGACTCTCGTAAAGCACATTGAAGATCGTCAGAATAAGAAAAAGAATACAGAAGTTG
TTTGGGTCTCATGTGAAGGTGAAAATCCTGCTGATATTGAAAACTTGGGAAATAGCATCG
ACTATTATAGCTTAAGTGGAGAGCAAGGATTTTTGGGAAATTACTTTCCATTTTTGAGCA
CAAAAGGCTATTTGCAGCCACTCGTTGCTGTTCAATTTAAATCTGTTAAACCTGGTGTAT
TAATAAATATTGAATGCAAAGCATGGGCTAAAAATATCAAACATGACCGCACAGATAGAC
GTGGTTCAGTACATTTTGAATTGATGATTGATGAAGTACCAAAGAAAAAAGGTGAAAATT
AAATAAATCGTTGAAAAATATTAAAATTAATAGCAAAAGATTTAAAGTTTTTGCTTCGAT
TGAGTAATTATAAATAATAAAAACTTTTTCTTTGAAATTAAAATTTGAAATGAAAAGAAG
ATAAAGGAAAATAAGTTTTGAGAAAATGCACATAGCATAAAATGAACACACATATAAATA
TAATGTTAATGAGGGGATCACATCGTAGTCATTGATTAAATTTCATTTTCTCGTTTTTGT
TATTAAATTTCCGTCCCTTATGTTTTAATTAATTTTATTCTCTTACTTTATAAATGAATT
ATTTTTAAATTAAAATTGTTATATATCGAACTGTTAAAAGAATCAAGCTCATTTCGACTG
CTTAAATGTAAATGTTTATGATTATTTAATTACGGTCAATGAGAATGAGACAAAACATCA
AAAGAATCTTTAAATTACAAAATTGTTGTCTCATTAATTTAATTTAATAAACCTTCTTTA
CATTAAGCATTCGAAAAGGGAAAATATTTACATTAATTTAAATGAGCTGAACCGAAATAA
AAAAAATTCAGCATCAGTTAGGTATTTCTAAGCGATGATAGAAAAAATATAAAATTGGCG
TTGAAAAATATTCCAAAAAAACTTAGTCTAATTATTTATTACTATCTAACATTTTTGGAT
GAATATGTATCATTTCAGAGTTACATTAACAAAAATTTTCTAAGTAATTAAAGAGGAAAT
TTTTTACTTCAATATATTTTATCAAAGATAGAATTAAA
>g6841.t3 Gene=g6841 Length=260
MFFIFGSTLTKERPKYELKESLIGTNPGLGFRPMPPESNVESTLIWYQKDNPDNSKYWVE
EIDRFLEGFKGNSTDRVDCRNSPPEVGKICNVNLDAFKPCISKENYGYEQGRPCIFLKLN
KIYNWEPEYYNNSKQLAENMPKTLVKHIEDRQNKKKNTEVVWVSCEGENPADIENLGNSI
DYYSLSGEQGFLGNYFPFLSTKGYLQPLVAVQFKSVKPGVLINIECKAWAKNIKHDRTDR
RGSVHFELMIDEVPKKKGEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6841.t3 | Gene3D | G3DSA:2.60.40.1660 | Na | 1 | 252 | 0 |
| 2 | g6841.t3 | PANTHER | PTHR11523:SF46 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 | 3 | 251 | 0 |
| 3 | g6841.t3 | PANTHER | PTHR11523 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT | 3 | 251 | 0 |
| 1 | g6841.t3 | Pfam | PF00287 | Sodium / potassium ATPase beta chain | 3 | 246 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006813 | potassium ion transport | BP |
| GO:0005890 | sodium:potassium-exchanging ATPase complex | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed