Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sodium/potassium-transporting ATPase subunit beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6841 g6841.t5 TTS g6841.t5 19025411 19025411
chr_2 g6841 g6841.t5 isoform g6841.t5 19026026 19030319
chr_2 g6841 g6841.t5 exon g6841.t5.exon1 19026026 19026029
chr_2 g6841 g6841.t5 cds g6841.t5.CDS1 19026028 19026029
chr_2 g6841 g6841.t5 exon g6841.t5.exon2 19026096 19026356
chr_2 g6841 g6841.t5 cds g6841.t5.CDS2 19026096 19026356
chr_2 g6841 g6841.t5 exon g6841.t5.exon3 19030184 19030319
chr_2 g6841 g6841.t5 cds g6841.t5.CDS3 19030184 19030319
chr_2 g6841 g6841.t5 TSS g6841.t5 19030587 19030587

Sequences

>g6841.t5 Gene=g6841 Length=401
ATGGCGGATAAAAATAAGTCAGATGGAGATGCATATCTTAATCGTCCTGAGAAACTTGGT
GCTTGGGATGGCTTTAAGCAATTTCTGTGGAATTCGGACACGAAGCAATTTATGGGCAGA
ACAAGCGGCAGTTGGTTGCGTATCCTCATCTTTTACATCATTTTCTACATCGTATTGGCC
ATTTTCTTTGTAACAATGTTTTTCATATTTGGTTCAACATTGACAAAAGAGCGACCAAAA
TATGAGCTAAAAGAGAGTCTGATTGGCACAAATCCAGGTTTAGGTTTTCGACCAATGCCC
CCAGAAAGTAACGTTGAAAGTACATTAATTTGGTATCAAAAGGACAATCCAGATAATTCT
AAATATTGGGTTGAGGAGATTGATCGTTTTTTAGAAGGTTT

>g6841.t5 Gene=g6841 Length=133
MADKNKSDGDAYLNRPEKLGAWDGFKQFLWNSDTKQFMGRTSGSWLRILIFYIIFYIVLA
IFFVTMFFIFGSTLTKERPKYELKESLIGTNPGLGFRPMPPESNVESTLIWYQKDNPDNS
KYWVEEIDRFLEG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6841.t5 Gene3D G3DSA:2.60.40.1660 Na 17 133 2.9E-36
2 g6841.t5 PANTHER PTHR11523:SF46 SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 10 132 6.1E-32
3 g6841.t5 PANTHER PTHR11523 SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT 10 132 6.1E-32
1 g6841.t5 Pfam PF00287 Sodium / potassium ATPase beta chain 20 132 7.2E-35
8 g6841.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 44 -
9 g6841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 45 70 -
7 g6841.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 71 133 -
5 g6841.t5 ProSitePatterns PS00390 Sodium and potassium ATPases beta subunits signature 1. 25 45 -
4 g6841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 70 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006813 potassium ion transport BP
GO:0005890 sodium:potassium-exchanging ATPase complex CC
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed