General information for g6852.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein escargot.
Parent gene
- The parent gene g6852 is located on chr_2: 19179203..19180871 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6852 | g6852.t1 | isoform | g6852.t1 | 19179203 | 19180871 |
| chr_2 | g6852 | g6852.t1 | exon | g6852.t1.exon1 | 19179203 | 19179396 |
| chr_2 | g6852 | g6852.t1 | cds | g6852.t1.CDS1 | 19179203 | 19179396 |
| chr_2 | g6852 | g6852.t1 | exon | g6852.t1.exon2 | 19179464 | 19180315 |
| chr_2 | g6852 | g6852.t1 | cds | g6852.t1.CDS2 | 19179464 | 19180315 |
| chr_2 | g6852 | g6852.t1 | exon | g6852.t1.exon3 | 19180784 | 19180871 |
| chr_2 | g6852 | g6852.t1 | cds | g6852.t1.CDS3 | 19180784 | 19180871 |
| chr_2 | g6852 | g6852.t1 | TSS | g6852.t1 | 19181055 | 19181055 |
| chr_2 | g6852 | g6852.t1 | TTS | g6852.t1 | NA | NA |
Sequences
>g6852.t1 Gene=g6852 Length=1134
ATGCCAACATTGACAATGCATAGTAAAAATAAAAATTATTATAGTCATTGTCCTTTAAAA
AAACGTCCCATTTTTATTGTTAAAGAAGAAGTGCCAGAGAACCTGAGTTTAAAAGACAAT
GACGTGAATATACGAGAGAGTTTTATAAAATTGGAGGACAACAATCATAACATTAAAGGT
AGTGCGATCAAAACGGATATGAAGCTAGATAAACCAATTCAATTGTCAGAATTGCTGTAT
CAATCAACATTTTCGGCTCCATTTCTGAGCTACTTTCCATTCCACACCTATCCTATTCCG
TTTCCACATCAATCACCCTACACTTTTTCACATCACCGACCGTTTTTACTGCCATCAGTT
GAACGTGACACATCCCCTCCGATATCATTTTTCGTTCAGCCCATTAATAAGTGCATGAAG
GCAACAGCAGTTGCAGAGAAAGTAAAAATGAACCAAAAACAATCAGCCGACTCATTGTCG
CCAACATCAAGTTACTTATCACAATCGGATCTATCGTTACGCTCATCATCGCCACTATCA
ATTTCATCTATAACTGAAAGTTTACCAACATCAATAACTAATTTTAATATCAAATCAATT
TTGAGTGGAACGTGGAATGAAAAATGTAACAATAGCAGCAGTCAAGGCAAAGATGAGAAA
TCAAAAAAAGAAATAATGTCAAGATTCAAATGTTCTGAATGTAAAAAATCTTATTCAACA
ACTTCAGGGCTTACAAAGCATCAACAATTTCACTGCCCAGCTAATAAAAATGGTAAAATG
AATAAAATTGTGACATGTAATGAATGTGGAAAAGTTTATTCTTCAACGGGAGCTCTAAAA
ATGCACATCAGAACTCATACTTTACCTTGCAAATGTCATCTTTGTGGCAAAGCATTTTCA
CGACCATGGTTATTGCAGGGACATATCAGAACGCATACAGGTGAAAAACCATTCCAATGT
CAATTCTGTCATCGAGCATTTGCTGATCGTTCAAATTTAAGAGCACATTTGCAAACTCAT
TCGGATGTCAAAAAATATTCATGTACGACTTGTAATAAAACTTTTTCACGAATGTCATTA
TTAACAAAACACAAAGACGCTGGTTGTCCTATAATTCACAAAATGGGGCTCTGA
>g6852.t1 Gene=g6852 Length=377
MPTLTMHSKNKNYYSHCPLKKRPIFIVKEEVPENLSLKDNDVNIRESFIKLEDNNHNIKG
SAIKTDMKLDKPIQLSELLYQSTFSAPFLSYFPFHTYPIPFPHQSPYTFSHHRPFLLPSV
ERDTSPPISFFVQPINKCMKATAVAEKVKMNQKQSADSLSPTSSYLSQSDLSLRSSSPLS
ISSITESLPTSITNFNIKSILSGTWNEKCNNSSSQGKDEKSKKEIMSRFKCSECKKSYST
TSGLTKHQQFHCPANKNGKMNKIVTCNECGKVYSSTGALKMHIRTHTLPCKCHLCGKAFS
RPWLLQGHIRTHTGEKPFQCQFCHRAFADRSNLRAHLQTHSDVKKYSCTTCNKTFSRMSL
LTKHKDAGCPIIHKMGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g6852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 202 | 289 | 4.1E-12 |
| 23 | g6852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 290 | 314 | 1.1E-10 |
| 24 | g6852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 315 | 338 | 1.8E-12 |
| 21 | g6852.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 339 | 373 | 5.9E-7 |
| 6 | g6852.t1 | PANTHER | PTHR24377:SF772 | PROTEIN ESCARGOT | 118 | 370 | 3.1E-85 |
| 7 | g6852.t1 | PANTHER | PTHR24377 | IP01015P-RELATED | 118 | 370 | 3.1E-85 |
| 3 | g6852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 229 | 251 | 4.2E-4 |
| 2 | g6852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 265 | 286 | 5.0E-5 |
| 5 | g6852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 291 | 312 | 1.9E-5 |
| 4 | g6852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 318 | 340 | 6.7E-5 |
| 1 | g6852.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 346 | 364 | 8.2E-4 |
| 20 | g6852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 231 | 251 | - |
| 17 | g6852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 266 | 286 | - |
| 19 | g6852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 290 | 312 | - |
| 18 | g6852.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 320 | 340 | - |
| 26 | g6852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 229 | 256 | 11.614 |
| 27 | g6852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 264 | 287 | 11.51 |
| 29 | g6852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 290 | 317 | 14.898 |
| 28 | g6852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 318 | 345 | 12.778 |
| 25 | g6852.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 346 | 373 | 10.492 |
| 14 | g6852.t1 | SMART | SM00355 | c2h2final6 | 229 | 251 | 0.021 |
| 16 | g6852.t1 | SMART | SM00355 | c2h2final6 | 264 | 286 | 0.0013 |
| 13 | g6852.t1 | SMART | SM00355 | c2h2final6 | 290 | 312 | 0.015 |
| 15 | g6852.t1 | SMART | SM00355 | c2h2final6 | 318 | 340 | 6.3E-4 |
| 12 | g6852.t1 | SMART | SM00355 | c2h2final6 | 346 | 373 | 11.0 |
| 10 | g6852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 228 | 273 | 1.94E-5 |
| 11 | g6852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 262 | 301 | 2.22E-10 |
| 8 | g6852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 289 | 340 | 5.33E-16 |
| 9 | g6852.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 331 | 365 | 2.51E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05706 (snail 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed