General information for g6863.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nuclear valosin-containing protein-like.
Parent gene
- The parent gene g6863 is located on chr_2: 19278761..19282366 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6863 | g6863.t2 | isoform | g6863.t2 | 19276703 | 19277868 |
| chr_2 | g6863 | g6863.t2 | exon | g6863.t2.exon1 | 19276703 | 19276788 |
| chr_2 | g6863 | g6863.t2 | exon | g6863.t2.exon2 | 19276895 | 19277868 |
| chr_2 | g6863 | g6863.t2 | cds | g6863.t2.CDS1 | 19277244 | 19277642 |
| chr_2 | g6863 | g6863.t2 | TSS | g6863.t2 | NA | NA |
| chr_2 | g6863 | g6863.t2 | TTS | g6863.t2 | NA | NA |
Sequences
>g6863.t2 Gene=g6863 Length=1060
GGTAAGAAAAATCATTTATTTATTTTTTCAATTGTTTACTAGTCATTTTATTATTAAATA
GTACGTCGGTGAAAGTGAACGAGCAGTCCGTCAATGCTTCCAACGTGCCCGCAATTCTGC
ACCATGTGTAATTTTCTTCGATGAATTTGATTCTTTGTGTCCAAAACGTTCCGATTCTGG
TGATAACAATGCCAGTCAGCGTGTTGTAAATCAACTTTTAACTGAAATGGATGGCATTGA
AGAACGTAAAGGAGTGTTTTTGATGGCAGCAACTAATCGTCCAGATATTGTAGATCCCGC
TGTTTTACGTCCTGGTCGTTTAGATAAAATTCTTTATATTGGATTGCCAGAGGAAGAAGA
TCGAACGGACATATTGAAAGCTTTAACAAGAATAAAACCACCATTGGCTGACGATGTTGA
TATTGAAGAGATATCAGCTGCAACAGAAGGTTTTACTGGTGCAGATCTTGATGGACTTAT
TCGACAAGCATCATTGCAAGCGTTAAAGGAATCAATTGACAATTCGGAAGATCAGGAGAT
ATTGATGGTTCATCAACGACATTTTCTTGATGCATTAAAGAAAACAAAACCATCAGTAAA
TGAAGCAGTGAGTAATTCAATGTAATTGGTCTTTATTAATTATTAATTTTATTTTTCCTT
CATAAATAGGATCGAAAAACTTATGACAAATTGAAAGAAAAATATGGAAATAAAACTGAC
TTCTAAATGATGATGACGATAAACTAGATGAAATGTATAATCGTTTTTAAATAAAAAAAA
GTTGGTTTTTAAAAACTAATTATGGTAAATAACTGATACATTCATTCATTAAAATTTTAG
TCTTATACAATAAAGAGAATTTACAAAGAAAAGGAACATTCTTAAAAAGTACATACAGAT
ATTTCTTAACTTCAATTTTCCACTAGATTACGAATATATATTCTATTTTTCACTGTTTGT
ACCGTTGAAAATCTATTCCTAAAAGTCATCTTTTTATTATTTTTTCATGCACACAAAGCA
GTAGCATTTTAAAAATGATGAACTAATTTTGCTTAACAGT
>g6863.t2 Gene=g6863 Length=132
MDGIEERKGVFLMAATNRPDIVDPAVLRPGRLDKILYIGLPEEEDRTDILKALTRIKPPL
ADDVDIEEISAATEGFTGADLDGLIRQASLQALKESIDNSEDQEILMVHQRHFLDALKKT
KPSVNEAVSNSM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6863.t2 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 41 | 1.3E-11 |
| 7 | g6863.t2 | Gene3D | G3DSA:1.10.8.60 | - | 42 | 128 | 7.3E-26 |
| 3 | g6863.t2 | PANTHER | PTHR23077 | AAA-FAMILY ATPASE | 1 | 126 | 4.0E-34 |
| 1 | g6863.t2 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 1 | 39 | 1.2E-5 |
| 2 | g6863.t2 | Pfam | PF17862 | AAA+ lid domain | 63 | 103 | 2.0E-12 |
| 5 | g6863.t2 | ProSitePatterns | PS00674 | AAA-protein family signature. | 10 | 28 | - |
| 4 | g6863.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 126 | 1.07E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
