General information for g6866.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g6866 is located on chr_2: 19348824..19350624 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6866 | g6866.t1 | isoform | g6866.t1 | 19348824 | 19350624 |
| chr_2 | g6866 | g6866.t1 | exon | g6866.t1.exon1 | 19348824 | 19349175 |
| chr_2 | g6866 | g6866.t1 | cds | g6866.t1.CDS1 | 19348824 | 19349175 |
| chr_2 | g6866 | g6866.t1 | exon | g6866.t1.exon2 | 19349232 | 19349468 |
| chr_2 | g6866 | g6866.t1 | cds | g6866.t1.CDS2 | 19349232 | 19349468 |
| chr_2 | g6866 | g6866.t1 | exon | g6866.t1.exon3 | 19349529 | 19349676 |
| chr_2 | g6866 | g6866.t1 | cds | g6866.t1.CDS3 | 19349529 | 19349676 |
| chr_2 | g6866 | g6866.t1 | exon | g6866.t1.exon4 | 19349735 | 19349786 |
| chr_2 | g6866 | g6866.t1 | cds | g6866.t1.CDS4 | 19349735 | 19349786 |
| chr_2 | g6866 | g6866.t1 | exon | g6866.t1.exon5 | 19349842 | 19350624 |
| chr_2 | g6866 | g6866.t1 | cds | g6866.t1.CDS5 | 19349842 | 19350624 |
| chr_2 | g6866 | g6866.t1 | TTS | g6866.t1 | 19350395 | 19350395 |
| chr_2 | g6866 | g6866.t1 | TSS | g6866.t1 | 19350683 | 19350683 |
Sequences
>g6866.t1 Gene=g6866 Length=1572
ATGTTGAAATTTTCAAATCATCCAATGATGTACCTTAAAGATGAGACAGAAGTGACAAAA
TCAATGTTTGAGGAAGAAAATCGTTTGGAACATTTACCATCGATTCCTGAATTTTATGCG
AATCAAGAAATTTTCATAACTGGTGGAACTGGATTTATTGGCAAAGTGTTGATCGAAAAA
CTTCTCAGATCATGTTCAGATATCAAGGCAATTTATGTACTTTTGAGACCAAAAAAAGGT
CAATCCATTGAGATGAGATTGAAAAAAATCAAAGAGCTACCTCTTTTTGGTCCCATTCGA
GAAATGATTCCGCATGTTCTTGATAAAATTATTCCTGTTGATGGTGATGTGAAAGAGTTG
AATCTTGGACTATCAAAAGAGAGTTTAGTATTGATGAAAAATGTATCAATTATTTTCCAT
TCTGCTGCAAGTGTTCGATTTGACGATTCATTGCGTGATGCAGTTTTATTAAATACTCGT
GGAACACGCGAAATCATGAAATTCGCAGAGACTTTGTTGAATATTAAAGTGGTCGTGCAT
GTTTCTACAACCTATAGCAATCCTGATAGAAATGTAGTTGAAGAGAAAATTTATCCTGCA
TACGTTGATTGGAGAAAGGCAATTGAAATTTGTGAAAAGTTTAGTGACGATGAATTGAAT
CAACTGACAAATCACTACATGAATTTTCTACCAAATACTTATGTTTTTTCTAAAAATTTA
GCCGAGCATTGTTCAAATGATTATAAGCATAAATTACCAATTGTGGTCTATCGTCCTTCC
ATTGTGATATCATCAATGAAAGAGCCATTACTTGGTTGGGTGGATAATTTCAACGGTCCG
GTGGGATTGTTAGTAGGATCAGCAATTGGTATTGTTCGAACAATGTATAGCAATCCAGAT
AATCGTTGTGATTTCACTCCAGTTGACTTGTGTGTAAAAGGACTGATTATTTCTTCATGG
AAACAAGCATTTCATGAAACAAAAAATACAATAACAGTTTATAACTGCTCATCATATGGT
GTAGCAACAATTAAAATTCAGCAAATAGTCGATATTGGAAAATGCCTTTGTGAACTGATT
CCATTTGATAAAATGGTTTTCTTACCAGGTGGTCATATAACAAAAAATCGCTGCCTAAAT
TATATTAAACTAATTTTGCTTCAACTGTTTCCCGCATTAATTATCGATGCAATACTCAAA
CTCAAAGGTCATAAGCCATTCATGACAAAAATTCAAAGAAAAATTTATGAAGCCAATTTA
GCATTGAAGTATTTTGTGCTCAACGAATGGAAATTTGAGAATAAAAATCTCTTAAATCTC
TCAAAGTGTTTGAAACTCAGCGATATGCGAGCATTCGACTTTAGTGACTGTTTTCATCAC
GATATTCTCTTATACATGAGAGCGTGTGTCATTGGAATTCGGAAGTATCTAATATTTGAT
GATGAAAAAAATAATGAATTCAATAAGGTTAAATTTCGTGCAATGAGATGGTTCTCAAGA
ATCTTACGGTTTGGATTTTATATGATTGTATTTTGGTTTATAATGACAAAATGTGAATTA
TTAAAGAAATAG
>g6866.t1 Gene=g6866 Length=523
MLKFSNHPMMYLKDETEVTKSMFEEENRLEHLPSIPEFYANQEIFITGGTGFIGKVLIEK
LLRSCSDIKAIYVLLRPKKGQSIEMRLKKIKELPLFGPIREMIPHVLDKIIPVDGDVKEL
NLGLSKESLVLMKNVSIIFHSAASVRFDDSLRDAVLLNTRGTREIMKFAETLLNIKVVVH
VSTTYSNPDRNVVEEKIYPAYVDWRKAIEICEKFSDDELNQLTNHYMNFLPNTYVFSKNL
AEHCSNDYKHKLPIVVYRPSIVISSMKEPLLGWVDNFNGPVGLLVGSAIGIVRTMYSNPD
NRCDFTPVDLCVKGLIISSWKQAFHETKNTITVYNCSSYGVATIKIQQIVDIGKCLCELI
PFDKMVFLPGGHITKNRCLNYIKLILLQLFPALIIDAILKLKGHKPFMTKIQRKIYEANL
ALKYFVLNEWKFENKNLLNLSKCLKLSDMRAFDFSDCFHHDILLYMRACVIGIRKYLIFD
DEKNNEFNKVKFRAMRWFSRILRFGFYMIVFWFIMTKCELLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g6866.t1 | CDD | cd05236 | FAR-N_SDR_e | 44 | 355 | 1.99501E-114 |
| 14 | g6866.t1 | CDD | cd09071 | FAR_C | 386 | 478 | 6.50522E-24 |
| 7 | g6866.t1 | Gene3D | G3DSA:3.40.50.720 | - | 16 | 366 | 1.1E-66 |
| 3 | g6866.t1 | PANTHER | PTHR11011:SF24 | FATTY ACYL-COA REDUCTASE | 32 | 517 | 1.5E-191 |
| 4 | g6866.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 32 | 517 | 1.5E-191 |
| 1 | g6866.t1 | Pfam | PF07993 | Male sterility protein | 46 | 313 | 1.9E-71 |
| 2 | g6866.t1 | Pfam | PF03015 | Male sterility protein | 388 | 478 | 7.5E-22 |
| 9 | g6866.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 380 | - |
| 12 | g6866.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 381 | 399 | - |
| 8 | g6866.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 400 | 496 | - |
| 11 | g6866.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 497 | 515 | - |
| 10 | g6866.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 516 | 523 | - |
| 6 | g6866.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 34 | 332 | 3.02E-29 |
| 5 | g6866.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 497 | 514 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed