Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6868 g6868.t2 isoform g6868.t2 19354760 19356963
chr_2 g6868 g6868.t2 exon g6868.t2.exon1 19354760 19354964
chr_2 g6868 g6868.t2 TSS g6868.t2 19354762 19354762
chr_2 g6868 g6868.t2 exon g6868.t2.exon2 19355913 19356145
chr_2 g6868 g6868.t2 cds g6868.t2.CDS1 19355927 19356145
chr_2 g6868 g6868.t2 exon g6868.t2.exon3 19356221 19356375
chr_2 g6868 g6868.t2 cds g6868.t2.CDS2 19356221 19356375
chr_2 g6868 g6868.t2 exon g6868.t2.exon4 19356539 19356597
chr_2 g6868 g6868.t2 cds g6868.t2.CDS3 19356539 19356597
chr_2 g6868 g6868.t2 exon g6868.t2.exon5 19356742 19356963
chr_2 g6868 g6868.t2 cds g6868.t2.CDS4 19356742 19356962
chr_2 g6868 g6868.t2 TTS g6868.t2 NA NA

Sequences

>g6868.t2 Gene=g6868 Length=874
GTCAGTCAATTAAACTATAACATTAAGCATAGTACATTTTTTTTTGCATTCTCACATAAA
GTTTCGAGAACAATTTTTATTTTAATTTTTCATAAATTTCTCTCTCTTAATTTAAACTTT
ATTGTGCTAGATTGTCTATTTATTTATCAGACATAACAAGCGGTTTGAAGTAAAGTTTTT
TTCATAAAAAGTTTATCGTTTACAGAATCACAAAAAACAATGCCAGAAAAAATTGAAAAG
TCATTGTCAGAACAGGAGCAGCTAACAAAATATTCATATGAAGTTAGCGAGTCATCAGAA
AACGAATATGATGTTGAGGAACAAGAAGAGCATGATGACGAAGAGAACGATGATGATGAA
CTACAAGACATTGGAGAATTACTTGGTTTTCGCATTACCGGCGGAAAGGATTTTTTTATG
CCAATCACAATATTTCACGTAAAGGAAAAGAGTCGCGCTGAGAAGGCAAACCTGAAGCTT
GGCGATGCAATTTTATCAATCAATGGAAAAGACACAGAAGATATGACGTTAGTTCGTGCA
AATAGATATCTTGCCAAAGTAGCAGATGGTGATGTGACGCTTCAAGTGGCAAAATTCAAT
CCAAATGAAGATGATGAAGATGTGCAGACGATTGAGGAAGTTGTGCTTGAAGGTCCCATA
AGTCTTCAACAACGATTAAAACAAATGCAGCAGCAACTTCTTGATGTTTCCGATATTCCA
CCACAGATTCAATCTAAACTGGCAATGCTAACGAAAGCATTAGAACAATTCATGACAATG
GATGCGGATGCACTCGAAGCATCGTGGAGTCAAGATGAAAAAGATGCATCTTCAATAGAA
CGTGAAATGTCACAAGACATTGGAAATAGTGAAG

>g6868.t2 Gene=g6868 Length=218
MPEKIEKSLSEQEQLTKYSYEVSESSENEYDVEEQEEHDDEENDDDELQDIGELLGFRIT
GGKDFFMPITIFHVKEKSRAEKANLKLGDAILSINGKDTEDMTLVRANRYLAKVADGDVT
LQVAKFNPNEDDEDVQTIEEVVLEGPISLQQRLKQMQQQLLDVSDIPPQIQSKLAMLTKA
LEQFMTMDADALEASWSQDEKDASSIEREMSQDIGNSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g6868.t2 CDD cd00992 PDZ_signaling 55 124 7.55757E-17
4 g6868.t2 Gene3D G3DSA:2.30.42.10 - 47 132 5.8E-18
7 g6868.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 47 -
8 g6868.t2 MobiDBLite mobidb-lite consensus disorder prediction 26 47 -
9 g6868.t2 MobiDBLite mobidb-lite consensus disorder prediction 195 218 -
2 g6868.t2 PANTHER PTHR24214 PDZ AND LIM DOMAIN PROTEIN ZASP 55 159 2.5E-13
1 g6868.t2 Pfam PF00595 PDZ domain 51 123 2.8E-11
10 g6868.t2 ProSiteProfiles PS50106 PDZ domain profile. 52 111 12.607
6 g6868.t2 SMART SM00228 pdz_new 53 127 6.4E-12
3 g6868.t2 SUPERFAMILY SSF50156 PDZ domain-like 53 125 1.84E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed