General information for g6868.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6868 is located on chr_2: 19355927..19357821 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6868 | g6868.t4 | isoform | g6868.t4 | 19354760 | 19357821 |
| chr_2 | g6868 | g6868.t4 | exon | g6868.t4.exon1 | 19354760 | 19354964 |
| chr_2 | g6868 | g6868.t4 | TSS | g6868.t4 | 19354762 | 19354762 |
| chr_2 | g6868 | g6868.t4 | exon | g6868.t4.exon2 | 19355913 | 19356145 |
| chr_2 | g6868 | g6868.t4 | exon | g6868.t4.exon3 | 19356221 | 19356367 |
| chr_2 | g6868 | g6868.t4 | exon | g6868.t4.exon4 | 19356698 | 19357327 |
| chr_2 | g6868 | g6868.t4 | cds | g6868.t4.CDS1 | 19356774 | 19357283 |
| chr_2 | g6868 | g6868.t4 | exon | g6868.t4.exon5 | 19357758 | 19357821 |
| chr_2 | g6868 | g6868.t4 | TTS | g6868.t4 | 19358039 | 19358039 |
Sequences
>g6868.t4 Gene=g6868 Length=1279
GTCAGTCAATTAAACTATAACATTAAGCATAGTACATTTTTTTTTGCATTCTCACATAAA
GTTTCGAGAACAATTTTTATTTTAATTTTTCATAAATTTCTCTCTCTTAATTTAAACTTT
ATTGTGCTAGATTGTCTATTTATTTATCAGACATAACAAGCGGTTTGAAGTAAAGTTTTT
TTCATAAAAAGTTTATCGTTTACAGAATCACAAAAAACAATGCCAGAAAAAATTGAAAAG
TCATTGTCAGAACAGGAGCAGCTAACAAAATATTCATATGAAGTTAGCGAGTCATCAGAA
AACGAATATGATGTTGAGGAACAAGAAGAGCATGATGACGAAGAGAACGATGATGATGAA
CTACAAGACATTGGAGAATTACTTGGTTTTCGCATTACCGGCGGAAAGGATTTTTTTATG
CCAATCACAATATTTCACGTAAAGGAAAAGAGTCGCGCTGAGAAGGCAAACCTGAAGCTT
GGCGATGCAATTTTATCAATCAATGGAAAAGACACAGAAGATATGACGTTAGTTCGTGCA
AATAGATATCTTGCCAAAGTAGCAGATGGTGATGTGACGCTTCAATAAAAGTATTTTATT
AAAATTTTAATGGTTCAAATACTTTTTAGGTCCCATAAGTCTTCAACAACGATTAAAACA
AATGCAGCAGCAACTTCTTGATGTTTCCGATATTCCACCACAGATTCAATCTAAACTGGC
AATGCTAACGAAAGCATTAGAACAATTCATGACAATGGATGCGGATGCACTCGAAGCATC
GTGGAGTCAAGATGAAAAAGATGCATCTTCAATAGAACGTGAAATGTCACAAGACATTGG
AAATAGTGAAGTAAATACTGATGATGAAAAGCAATTTTCAACCATTGAAGAAGAGATTGA
AAATGAAGATATCGAAGAGGGAAAGCTTTCAAGTACTCGTGAGACGTCTTATTCATTTGA
GGATTTAGTTGGTGATGATGAACGAAACTTAGACAGCTATGATCAATGTGAGGCAGAAGA
GTTTAGTTGTGAAGAAGAGGAAGAATTCGTATGCGACACAGAAGAAAAGTTACAACAAGC
TGCTGAACGAAAAATGAAGAACGAAAAAATTCAAACTTTACAAAAGTCGTGGCAAAAGTT
GTGTGAAAATCAAAAGACTATTCACAAGTAAGCTTACTGTTTGTCCATTGTGGTTTTAAG
TTTGTTGAGGGAATTAATAAACCAACTGAATGAGTCAAAAGTCATTTCATTTTATGAGCG
TAAAAGAAATCCTCAATAG
>g6868.t4 Gene=g6868 Length=169
MQQQLLDVSDIPPQIQSKLAMLTKALEQFMTMDADALEASWSQDEKDASSIEREMSQDIG
NSEVNTDDEKQFSTIEEEIENEDIEEGKLSSTRETSYSFEDLVGDDERNLDSYDQCEAEE
FSCEEEEEFVCDTEEKLQQAAERKMKNEKIQTLQKSWQKLCENQKTIHK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6868.t4 | Coils | Coil | Coil | 131 | 151 | - |
| 1 | g6868.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 111 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed