General information for g6899.t26
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Guanine nucleotide-binding protein subunit beta-like protein.
Parent gene
- The parent gene g6899 is located on chr_2: 19757258..19758555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6899 | g6899.t26 | TSS | g6899.t26 | 19756988 | 19756988 |
| chr_2 | g6899 | g6899.t26 | isoform | g6899.t26 | 19757065 | 19758475 |
| chr_2 | g6899 | g6899.t26 | exon | g6899.t26.exon1 | 19757065 | 19757165 |
| chr_2 | g6899 | g6899.t26 | cds | g6899.t26.CDS1 | 19757065 | 19757165 |
| chr_2 | g6899 | g6899.t26 | exon | g6899.t26.exon2 | 19757458 | 19757512 |
| chr_2 | g6899 | g6899.t26 | cds | g6899.t26.CDS2 | 19757458 | 19757512 |
| chr_2 | g6899 | g6899.t26 | exon | g6899.t26.exon3 | 19757837 | 19758475 |
| chr_2 | g6899 | g6899.t26 | cds | g6899.t26.CDS3 | 19757837 | 19758475 |
| chr_2 | g6899 | g6899.t26 | TTS | g6899.t26 | 19758558 | 19758558 |
Sequences
>g6899.t26 Gene=g6899 Length=795
ATGACCGAAACTTTGCAATTAAAAGGAACTCTTATCGGCCATTCAGGATGGGTAACTCAA
ATTGCTACTAATCCCAAATATCCTGATATGATTTTGTCATCATTGTGGGATTTGGCAGCA
GGAAAATCAACTCGTCGTTTTGAGGATCACACAAAGGATGTGCTCTCAGTTGCTTTTAGC
GCTGACAATCGTCAAATCGTTTCTGGCTCACGCGATAAGACTATTAAATTGTGGAATACA
TTAGCCGAGTGCAAATACACCATTCAAGAAGATGGCCACTCTGACTGGGTCTCATGCGTT
CGTTTCTCACCAAATCAAGTAAATCCAATCATTGTTTCTGCTGGTTGGGATAAAACTGTT
AAGGTCTGGAACTTGGCAAACTGCAAATTGAAGTTGAACCATTACGGTCACAATGGATAC
TTGAATACTGTCACTGTTTCACCTGATGGTTCATTGTGCACATCAGGCGGTAAGGACTAC
AAGGCTTTGTTGTGGGATTTGAATGACGGCAAGCACTTGCACACACTTGAACATAACGAC
ATCATCAATGCCTTATGCTTCTCACCAAACCGCTACTGGTTGTGCGTTGCTTACGGATCA
TCAATCAAGATTTGGGATTTGGCATGCAAGAAAATGGTTGAAGAATTGCGTCCAGGTGTC
TCGACAAACGATTCATCAAAGGCTGATCCACCACAGTGCTTGTCACTTGCTTGGTCAACT
GATGGACAAACTTTGTTTGCCGGCTACAGCGATAACAAGATTCGCGTTTGGCAAGTTTCA
GTTACTGCTCGTTAA
>g6899.t26 Gene=g6899 Length=264
MTETLQLKGTLIGHSGWVTQIATNPKYPDMILSSLWDLAAGKSTRRFEDHTKDVLSVAFS
ADNRQIVSGSRDKTIKLWNTLAECKYTIQEDGHSDWVSCVRFSPNQVNPIIVSAGWDKTV
KVWNLANCKLKLNHYGHNGYLNTVTVSPDGSLCTSGGKDYKALLWDLNDGKHLHTLEHND
IINALCFSPNRYWLCVAYGSSIKIWDLACKKMVEELRPGVSTNDSSKADPPQCLSLAWST
DGQTLFAGYSDNKIRVWQVSVTAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g6899.t26 | CDD | cd00200 | WD40 | 2 | 258 | 4.06035E-72 |
| 12 | g6899.t26 | Gene3D | G3DSA:2.130.10.10 | - | 7 | 264 | 8.9E-98 |
| 6 | g6899.t26 | PANTHER | PTHR19868 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 | 1 | 34 | 4.2E-121 |
| 7 | g6899.t26 | PANTHER | PTHR19868 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 | 35 | 261 | 4.2E-121 |
| 9 | g6899.t26 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 66 | 80 | 1.8E-7 |
| 8 | g6899.t26 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 111 | 125 | 1.8E-7 |
| 10 | g6899.t26 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 153 | 167 | 1.8E-7 |
| 4 | g6899.t26 | Pfam | PF00400 | WD domain, G-beta repeat | 42 | 79 | 6.2E-8 |
| 5 | g6899.t26 | Pfam | PF00400 | WD domain, G-beta repeat | 86 | 124 | 1.4E-6 |
| 3 | g6899.t26 | Pfam | PF00400 | WD domain, G-beta repeat | 133 | 166 | 0.0011 |
| 2 | g6899.t26 | Pfam | PF00400 | WD domain, G-beta repeat | 170 | 206 | 2.0E-5 |
| 1 | g6899.t26 | Pfam | PF00400 | WD domain, G-beta repeat | 235 | 257 | 0.0021 |
| 15 | g6899.t26 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 66 | 80 | - |
| 14 | g6899.t26 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 111 | 125 | - |
| 16 | g6899.t26 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 153 | 167 | - |
| 23 | g6899.t26 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 35 | 264 | 37.597 |
| 24 | g6899.t26 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 79 | 15.22 |
| 26 | g6899.t26 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 90 | 125 | 13.316 |
| 25 | g6899.t26 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 134 | 175 | 12.881 |
| 27 | g6899.t26 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 264 | 10.375 |
| 22 | g6899.t26 | SMART | SM00320 | WD40_4 | 4 | 37 | 91.0 |
| 17 | g6899.t26 | SMART | SM00320 | WD40_4 | 40 | 79 | 4.9E-10 |
| 19 | g6899.t26 | SMART | SM00320 | WD40_4 | 81 | 124 | 2.3E-9 |
| 18 | g6899.t26 | SMART | SM00320 | WD40_4 | 127 | 166 | 7.3E-4 |
| 21 | g6899.t26 | SMART | SM00320 | WD40_4 | 169 | 206 | 2.1E-5 |
| 20 | g6899.t26 | SMART | SM00320 | WD40_4 | 223 | 258 | 0.25 |
| 11 | g6899.t26 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 259 | 2.38E-58 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed