General information for g6899.t47
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Guanine nucleotide-binding protein subunit beta-like protein.
Parent gene
- The parent gene g6899 is located on chr_2: 19757258..19758555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6899 | g6899.t47 | TSS | g6899.t47 | 19756988 | 19756988 |
| chr_2 | g6899 | g6899.t47 | isoform | g6899.t47 | 19757243 | 19758475 |
| chr_2 | g6899 | g6899.t47 | exon | g6899.t47.exon1 | 19757243 | 19757398 |
| chr_2 | g6899 | g6899.t47 | exon | g6899.t47.exon2 | 19757458 | 19757512 |
| chr_2 | g6899 | g6899.t47 | exon | g6899.t47.exon3 | 19757837 | 19758475 |
| chr_2 | g6899 | g6899.t47 | cds | g6899.t47.CDS1 | 19758314 | 19758475 |
| chr_2 | g6899 | g6899.t47 | TTS | g6899.t47 | 19758558 | 19758558 |
Sequences
>g6899.t47 Gene=g6899 Length=850
AGACAAGACTTTGATTGTATGGCGTTTATTGCGTGAAGCTAATAGCTACGGTATTCCTCA
AAAGCGTTTGTATGGACACAGCCATTTTATCAGTGACGTTGTTCTCTCATCTGACGGAAA
TTATGCTCTTTCTGGATCATGGGACAAGACTTTGAGATTGTGGGATTTGGCAGCAGGAAA
ATCAACTCGTCGTTTTGAGGATCACACAAAGGATGTGCTCTCAGTTGCTTTTAGCGCTGA
CAATCGTCAAATCGTTTCTGGCTCACGCGATAAGACTATTAAATTGTGGAATACATTAGC
CGAGTGCAAATACACCATTCAAGAAGATGGCCACTCTGACTGGGTCTCATGCGTTCGTTT
CTCACCAAATCAAGTAAATCCAATCATTGTTTCTGCTGGTTGGGATAAAACTGTTAAGGT
CTGGAACTTGGCAAACTGCAAATTGAAGTTGAACCATTACGGTCACAATGGATACTTGAA
TACTGTCACTGTTTCACCTGATGGTTCATTGTGCACATCAGGCGGTAAGGACTACAAGGC
TTTGTTGTGGGATTTGAATGACGGCAAGCACTTGCACACACTTGAACATAACGACATCAT
CAATGCCTTATGCTTCTCACCAAACCGCTACTGGTTGTGCGTTGCTTACGGATCATCAAT
CAAGATTTGGGATTTGGCATGCAAGAAAATGGTTGAAGAATTGCGTCCAGGTGTCTCGAC
AAACGATTCATCAAAGGCTGATCCACCACAGTGCTTGTCACTTGCTTGGTCAACTGATGG
ACAAACTTTGTTTGCCGGCTACAGCGATAACAAGATTCGCGTTTGGCAAGTTTCAGTTAC
TGCTCGTTAA
>g6899.t47 Gene=g6899 Length=53
MVEELRPGVSTNDSSKADPPQCLSLAWSTDGQTLFAGYSDNKIRVWQVSVTAR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6899.t47 | Gene3D | G3DSA:2.130.10.10 | - | 1 | 52 | 0.0000000 |
| 3 | g6899.t47 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 15 | 53 | 9.7310000 |
| 4 | g6899.t47 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 24 | 53 | 10.3750000 |
| 1 | g6899.t47 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 49 | 0.0000079 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
