General information for g6901.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein daughter of sevenless.
Parent gene
- The parent gene g6901 is located on chr_2: 19771876..19774355 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6901 | g6901.t1 | TTS | g6901.t1 | 19769780 | 19769780 |
| chr_2 | g6901 | g6901.t1 | isoform | g6901.t1 | 19769997 | 19774355 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon1 | 19769997 | 19770260 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS1 | 19769997 | 19770260 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon2 | 19770528 | 19770623 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS2 | 19770528 | 19770623 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon3 | 19770685 | 19771473 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS3 | 19770685 | 19771473 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon4 | 19771572 | 19772020 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS4 | 19771572 | 19772020 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon5 | 19772167 | 19772439 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS5 | 19772167 | 19772439 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon6 | 19772498 | 19772558 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS6 | 19772498 | 19772558 |
| chr_2 | g6901 | g6901.t1 | exon | g6901.t1.exon7 | 19774272 | 19774355 |
| chr_2 | g6901 | g6901.t1 | cds | g6901.t1.CDS7 | 19774272 | 19774355 |
| chr_2 | g6901 | g6901.t1 | TSS | g6901.t1 | 19774867 | 19774867 |
Sequences
>g6901.t1 Gene=g6901 Length=2016
ATGCATAAAAAAAATTGTGAAGTATATCATAGTGGCTGGCTTGTTAAATCGCCCCCAAAT
CCTCGAGGATCAATTTTCAAAGCTAGGTGGAGACGAAGATGGTTCACATTATTGCAAGGC
GAATTACCGGGACAATACTTTCTAGAATACTACACAGATAGTACATGTCGTAGAAGAAAA
GGAATAATCGATTTAGATCAAGTGGAACAAGTTGACGCCGGCTTAAGTTTAGATCGAGCA
AGTATTAAATTTCAGTGGATGTTTGATATGAAAACGCCATCTAGAACATATTATTTGGCG
GCCGACACTGAAAGAGATATGCGCGATTGGGTTATGGTAATTTGTCAAGTGTGTAACCTT
CAAGAGACTGACGAAAAGAATACCGCAAATGAATCAATATCACCGTCAACCACACAATAT
AATGATTTTTTAGTGAGGGAAATACCAAATGATTCTACCAATACTGAAACTTCTTCAAAT
TCTAAAGAACTTGTTTCTCAGATGGGTCAACTATCATTATGCAATGACAAAGATTATGAA
AACGGAGACTTTTTAAACAAATTTCAAAGTGATAATAATAATCATCAATCACCTACAACA
TATATCAATCTATCTGAAAATACATTGTCTTCGGGAAAAATTATAAAACAATCAATTTCC
AACTCTACGCTTTCCTCAACATCAACTGTTATATCTCACCCTACTACGAAATCAACAGGA
GCAATCAAGAAGATTCCTGACAAGATTGACTTGAAGCGCGATGATAAAATAAATAACAAT
CTTATAAAAGAACACTCTACTTCTTATAGTTCATCTGGACCTTATATTCCATTAAGTGAT
TGTTTCAGTGGAAGCCCAGTTTTGTTTAAAAATGAAAGTGATCCAAAAACACCATTGAAT
TCTTTGGATCCAAAATTTTACGATAATCCAAGATCGCATATTACCAATATTGGCCTCAAT
TTGACAGATGATCAACCAAATTCACCAAAACGAACAAATATTCAACAGCAACAAACTCCA
ACTCTTCAGAAGCATGGTAAACAATGTTTGAATTCGTCACCAACTGACTCTGAAGGTGGA
TCGACAGACGAGGAATGGAGTGAACCCAAAACAAATGAAGCAAGAAAAACTCGACCATCT
GATAGTTCAATGGAAAATGAAACGATTATTACAGCAGGTCAAAGTTATATGCGAATGTCT
ATACAAAACCCTATACCATTACCGCCTAAACGCATTAGTTTAGTACTTGATAAAAAACAA
GAATCTTCTGATACAGAAGAAAATGCTTCGCCAATCGGACCAAAAGATAGATCGGCATTT
GTAAATGAAGAGAGTTACGATGTACCGCGTTGTTATTTTAGACCACCATTAAGCGGAAGC
CATCGTGATATTGACACAATGACACCATTAAGCACAGGACACATAATGACTTCAACGCCA
AATTTGATTCACAGCGGAATGTTAGAGAAAAACTTCTATAGTAATGCACCACCTCGTGAG
CCTAATGTTTTCCGCTTTGATGTCGAAAGCATTGCAATGCCTCCTCCTGAAGTAAATAGA
ACTCTTAAACCAAAAAAGAACGGTTTTGGTGTTATTAATAATGCACAAGCTGCACCAATT
GTTGATAGAAAATTGAAGCCAACCACACTACCAAAGCCACAAGTCATTGTTGGTACAAAC
TCTCTCAAACGTCGTGGACCAGAAACAATTTCACTTTCGGAAGTAGATGACTCTTTGCTA
AATGAATCGATTGCATCAAACCATTCATTTGGTCTGTCACCGAAAACACCCGATCGTTTA
CAGTATTTAGATTTAGATCATACAAACAGTCCACAAAAGAATCCGTTTGGATCTATTGCT
AGCAACATGACTAGCTTGGATATTTCGTTCAATGGATCTATTAAGGGTGAAGGTCCAACA
TATACAACCGTCGATTTTGTAAAAACTGACGCCTTCAATAGAGTTCGTGAAGATTCTGAG
ATGACGAGAGCAAGCAAGTCAAGGATGAAAAATTAA
>g6901.t1 Gene=g6901 Length=671
MHKKNCEVYHSGWLVKSPPNPRGSIFKARWRRRWFTLLQGELPGQYFLEYYTDSTCRRRK
GIIDLDQVEQVDAGLSLDRASIKFQWMFDMKTPSRTYYLAADTERDMRDWVMVICQVCNL
QETDEKNTANESISPSTTQYNDFLVREIPNDSTNTETSSNSKELVSQMGQLSLCNDKDYE
NGDFLNKFQSDNNNHQSPTTYINLSENTLSSGKIIKQSISNSTLSSTSTVISHPTTKSTG
AIKKIPDKIDLKRDDKINNNLIKEHSTSYSSSGPYIPLSDCFSGSPVLFKNESDPKTPLN
SLDPKFYDNPRSHITNIGLNLTDDQPNSPKRTNIQQQQTPTLQKHGKQCLNSSPTDSEGG
STDEEWSEPKTNEARKTRPSDSSMENETIITAGQSYMRMSIQNPIPLPPKRISLVLDKKQ
ESSDTEENASPIGPKDRSAFVNEESYDVPRCYFRPPLSGSHRDIDTMTPLSTGHIMTSTP
NLIHSGMLEKNFYSNAPPREPNVFRFDVESIAMPPPEVNRTLKPKKNGFGVINNAQAAPI
VDRKLKPTTLPKPQVIVGTNSLKRRGPETISLSEVDDSLLNESIASNHSFGLSPKTPDRL
QYLDLDHTNSPQKNPFGSIASNMTSLDISFNGSIKGEGPTYTTVDFVKTDAFNRVREDSE
MTRASKSRMKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6901.t1 | CDD | cd13384 | PH_Gab2_2 | 7 | 121 | 3.97511E-59 |
| 5 | g6901.t1 | Gene3D | G3DSA:2.30.29.30 | - | 1 | 141 | 3.8E-29 |
| 8 | g6901.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 386 | - |
| 10 | g6901.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 360 | - |
| 11 | g6901.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 382 | - |
| 9 | g6901.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 436 | - |
| 2 | g6901.t1 | PANTHER | PTHR45960:SF2 | PROTEIN DAUGHTER OF SEVENLESS | 7 | 665 | 9.4E-77 |
| 3 | g6901.t1 | PANTHER | PTHR45960 | GRB2-ASSOCIATED-BINDING PROTEIN | 7 | 665 | 9.4E-77 |
| 1 | g6901.t1 | Pfam | PF00169 | PH domain | 8 | 118 | 5.4E-18 |
| 12 | g6901.t1 | ProSiteProfiles | PS50003 | PH domain profile. | 7 | 119 | 14.232 |
| 7 | g6901.t1 | SMART | SM00233 | PH_update | 8 | 121 | 6.9E-18 |
| 4 | g6901.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 6 | 119 | 1.18E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20231 (protein daughter of sevenless)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
