General information for g6901.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein daughter of sevenless.
Parent gene
- The parent gene g6901 is located on chr_2: 19771876..19774355 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6901 | g6901.t2 | TTS | g6901.t2 | 19769780 | 19769780 |
| chr_2 | g6901 | g6901.t2 | isoform | g6901.t2 | 19769997 | 19774355 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon1 | 19769997 | 19770260 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS1 | 19769997 | 19770260 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon2 | 19770528 | 19770623 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS2 | 19770528 | 19770623 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon3 | 19770685 | 19771473 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS3 | 19770685 | 19771473 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon4 | 19771572 | 19772038 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS4 | 19771572 | 19772038 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon5 | 19772167 | 19772439 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS5 | 19772167 | 19772439 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon6 | 19772498 | 19772558 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS6 | 19772498 | 19772558 |
| chr_2 | g6901 | g6901.t2 | exon | g6901.t2.exon7 | 19774272 | 19774355 |
| chr_2 | g6901 | g6901.t2 | cds | g6901.t2.CDS7 | 19774272 | 19774355 |
| chr_2 | g6901 | g6901.t2 | TSS | g6901.t2 | 19774867 | 19774867 |
Sequences
>g6901.t2 Gene=g6901 Length=2034
ATGCATAAAAAAAATTGTGAAGTATATCATAGTGGCTGGCTTGTTAAATCGCCCCCAAAT
CCTCGAGGATCAATTTTCAAAGCTAGGTGGAGACGAAGATGGTTCACATTATTGCAAGGC
GAATTACCGGGACAATACTTTCTAGAATACTACACAGATAGTACATGTCGTAGAAGAAAA
GGAATAATCGATTTAGATCAAGTGGAACAAGTTGACGCCGGCTTAAGTTTAGATCGAGCA
AGTATTAAATTTCAGTGGATGTTTGATATGAAAACGCCATCTAGAACATATTATTTGGCG
GCCGACACTGAAAGAGATATGCGCGATTGGGTTATGGTAATTTGTCAAGTGTGTAACCTT
CAAGAGACTGACGAAAAGAATACCGCAAATGAATCAATATCACCGTCAACCACACAATAC
TATAATATATGTCCAGATAATGATTTTTTAGTGAGGGAAATACCAAATGATTCTACCAAT
ACTGAAACTTCTTCAAATTCTAAAGAACTTGTTTCTCAGATGGGTCAACTATCATTATGC
AATGACAAAGATTATGAAAACGGAGACTTTTTAAACAAATTTCAAAGTGATAATAATAAT
CATCAATCACCTACAACATATATCAATCTATCTGAAAATACATTGTCTTCGGGAAAAATT
ATAAAACAATCAATTTCCAACTCTACGCTTTCCTCAACATCAACTGTTATATCTCACCCT
ACTACGAAATCAACAGGAGCAATCAAGAAGATTCCTGACAAGATTGACTTGAAGCGCGAT
GATAAAATAAATAACAATCTTATAAAAGAACACTCTACTTCTTATAGTTCATCTGGACCT
TATATTCCATTAAGTGATTGTTTCAGTGGAAGCCCAGTTTTGTTTAAAAATGAAAGTGAT
CCAAAAACACCATTGAATTCTTTGGATCCAAAATTTTACGATAATCCAAGATCGCATATT
ACCAATATTGGCCTCAATTTGACAGATGATCAACCAAATTCACCAAAACGAACAAATATT
CAACAGCAACAAACTCCAACTCTTCAGAAGCATGGTAAACAATGTTTGAATTCGTCACCA
ACTGACTCTGAAGGTGGATCGACAGACGAGGAATGGAGTGAACCCAAAACAAATGAAGCA
AGAAAAACTCGACCATCTGATAGTTCAATGGAAAATGAAACGATTATTACAGCAGGTCAA
AGTTATATGCGAATGTCTATACAAAACCCTATACCATTACCGCCTAAACGCATTAGTTTA
GTACTTGATAAAAAACAAGAATCTTCTGATACAGAAGAAAATGCTTCGCCAATCGGACCA
AAAGATAGATCGGCATTTGTAAATGAAGAGAGTTACGATGTACCGCGTTGTTATTTTAGA
CCACCATTAAGCGGAAGCCATCGTGATATTGACACAATGACACCATTAAGCACAGGACAC
ATAATGACTTCAACGCCAAATTTGATTCACAGCGGAATGTTAGAGAAAAACTTCTATAGT
AATGCACCACCTCGTGAGCCTAATGTTTTCCGCTTTGATGTCGAAAGCATTGCAATGCCT
CCTCCTGAAGTAAATAGAACTCTTAAACCAAAAAAGAACGGTTTTGGTGTTATTAATAAT
GCACAAGCTGCACCAATTGTTGATAGAAAATTGAAGCCAACCACACTACCAAAGCCACAA
GTCATTGTTGGTACAAACTCTCTCAAACGTCGTGGACCAGAAACAATTTCACTTTCGGAA
GTAGATGACTCTTTGCTAAATGAATCGATTGCATCAAACCATTCATTTGGTCTGTCACCG
AAAACACCCGATCGTTTACAGTATTTAGATTTAGATCATACAAACAGTCCACAAAAGAAT
CCGTTTGGATCTATTGCTAGCAACATGACTAGCTTGGATATTTCGTTCAATGGATCTATT
AAGGGTGAAGGTCCAACATATACAACCGTCGATTTTGTAAAAACTGACGCCTTCAATAGA
GTTCGTGAAGATTCTGAGATGACGAGAGCAAGCAAGTCAAGGATGAAAAATTAA
>g6901.t2 Gene=g6901 Length=677
MHKKNCEVYHSGWLVKSPPNPRGSIFKARWRRRWFTLLQGELPGQYFLEYYTDSTCRRRK
GIIDLDQVEQVDAGLSLDRASIKFQWMFDMKTPSRTYYLAADTERDMRDWVMVICQVCNL
QETDEKNTANESISPSTTQYYNICPDNDFLVREIPNDSTNTETSSNSKELVSQMGQLSLC
NDKDYENGDFLNKFQSDNNNHQSPTTYINLSENTLSSGKIIKQSISNSTLSSTSTVISHP
TTKSTGAIKKIPDKIDLKRDDKINNNLIKEHSTSYSSSGPYIPLSDCFSGSPVLFKNESD
PKTPLNSLDPKFYDNPRSHITNIGLNLTDDQPNSPKRTNIQQQQTPTLQKHGKQCLNSSP
TDSEGGSTDEEWSEPKTNEARKTRPSDSSMENETIITAGQSYMRMSIQNPIPLPPKRISL
VLDKKQESSDTEENASPIGPKDRSAFVNEESYDVPRCYFRPPLSGSHRDIDTMTPLSTGH
IMTSTPNLIHSGMLEKNFYSNAPPREPNVFRFDVESIAMPPPEVNRTLKPKKNGFGVINN
AQAAPIVDRKLKPTTLPKPQVIVGTNSLKRRGPETISLSEVDDSLLNESIASNHSFGLSP
KTPDRLQYLDLDHTNSPQKNPFGSIASNMTSLDISFNGSIKGEGPTYTTVDFVKTDAFNR
VREDSEMTRASKSRMKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6901.t2 | CDD | cd13384 | PH_Gab2_2 | 7 | 121 | 4.33987E-59 |
| 5 | g6901.t2 | Gene3D | G3DSA:2.30.29.30 | - | 1 | 148 | 3.4E-29 |
| 8 | g6901.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 392 | - |
| 11 | g6901.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 366 | - |
| 9 | g6901.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 388 | - |
| 10 | g6901.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 442 | - |
| 2 | g6901.t2 | PANTHER | PTHR45960:SF2 | PROTEIN DAUGHTER OF SEVENLESS | 7 | 671 | 9.1E-78 |
| 3 | g6901.t2 | PANTHER | PTHR45960 | GRB2-ASSOCIATED-BINDING PROTEIN | 7 | 671 | 9.1E-78 |
| 1 | g6901.t2 | Pfam | PF00169 | PH domain | 8 | 118 | 5.5E-18 |
| 12 | g6901.t2 | ProSiteProfiles | PS50003 | PH domain profile. | 7 | 119 | 14.232 |
| 7 | g6901.t2 | SMART | SM00233 | PH_update | 8 | 121 | 6.9E-18 |
| 4 | g6901.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 6 | 119 | 1.21E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20231 (protein daughter of sevenless)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
