General information for g6902.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Membrane-associated protein Hem.
Parent gene
- The parent gene g6902 is located on chr_2: 19775324..19778758 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6902 | g6902.t1 | TSS | g6902.t1 | 19774918 | 19774918 |
| chr_2 | g6902 | g6902.t1 | isoform | g6902.t1 | 19775324 | 19778758 |
| chr_2 | g6902 | g6902.t1 | exon | g6902.t1.exon1 | 19775324 | 19777171 |
| chr_2 | g6902 | g6902.t1 | cds | g6902.t1.CDS1 | 19775324 | 19777171 |
| chr_2 | g6902 | g6902.t1 | exon | g6902.t1.exon2 | 19777238 | 19778758 |
| chr_2 | g6902 | g6902.t1 | cds | g6902.t1.CDS2 | 19777238 | 19778758 |
| chr_2 | g6902 | g6902.t1 | TTS | g6902.t1 | 19779524 | 19779524 |
Sequences
>g6902.t1 Gene=g6902 Length=3369
ATGGCTCGTCAATTAAATCCAATTCAACAAAAGATTTCAGAGAAATTGATCATTTTAAAT
GATCGGGGCGTTGGTATTTTGACAAGAATTTACAACATTAAAAAAGCCTGTGGCGATGCA
AAATCTAAACCCGGTTTTCTCTCAGACAAATCACTGGAATCATCAATAAAGTTTATTATC
AAAAAGTTTCCAAATATTGATACAAAAAGTCTTACAGCAATAACAAATATCAAAGTAGAA
GTTATCAAATCACTTTCGCTTTATTACTACACATTTGTGGATTTACTCGATTTTAAAGAC
AATGTTTGTGAATTATTGACAACAATGGATGCTCTTCAGATTTATCTCGATATCACAGTC
AATCATGAATTAACGAAAAATTATTTGGATTTGGTTACCACATATGTCTCGCTTATGATC
CTTTTGTCACGAGTAGAAGATCGCAAAGCTGTTCTTGGACTCTTTAATGCAGCTTATGAA
TTACAAAATAATGGCAGCGATCCAAATTTTCCACGTTTAGGACAAATGATTATCGATTAT
GACCAACCTACAAAGAAATTATCAGACGAATTCATTCCACATCAACGTCTTCTTACAAGC
GCTCTTAAGTCTCTTGTTCAAGTCTATCCAATGCGTAATTTAACCGCAGAGAAATGGCGT
GAATTGCAAATTCTTACGCTTGTCGGTAATCAAGCCGCTTTACTCAAACCTTCAAAAACT
GATACAATGTCGTGTGAATATGTTTCGCTAGAAACACTCGATAGATGGATTATTTTCGGT
CTTATGCTGAATCATCAAATGCTGGGTCAATCAAATCAAGTTGCGAGTATGTGGATTGCT
GCTCTCGAATCATCATGGGTTATAGCTCTCTTCAGAGATGAAATTATTTATATTCATCAG
TACATTCAAAATGCTTTTGAAGGAATAAAAGGATACAGTAAAAGAATTTCTGAAGTGAAA
GATTGCTATAGTCATGCAATCCAGAAAGCAGCATTAATGCATCGTGAACGTAGAAAGTTT
TTGAGAACTGCTTTGAAAGAACTCGCTTTAATTTTGACAGATCAACCAGGATTACTTGGA
CCCAAAGCATTATATGTTTTGATTGGTTTATGTTACGCTCGCGATGAAATTTTATGGCTT
TTGCGGCACAATGAAAACCCACCAATCAGTTCAAAAGCTAAAGGAAAATCAAGTGAAGAT
TTGGTTGACAGACAATTACCTGAATTACTTTTTCATATGGAAGAATTAAGAGGACTTGTA
CGTAAATATACTCAAGTAATTCAACGATATTACGTTCAATATTTATCGGGCTATGATGCA
ATAGAGCTCAATGTAAAAATGCAAAATTTACAAGTGTGTCCCGAGGATGAAAGCATAATT
TTATCATCATTATATCAAACGATTGCACCATTGACAGTGAAACAAGTCGAAATGGGTGAA
ACATTTGATTTTCGAGCTTTCCGTTTAGATTGGTTCAGACTTCAGTGCTACATGAGTGTT
GCAAAAGCAGGCATTAAAATTACAGATCATGTTGATTTAGCAAGACTTTTTGATTCAATG
ATTTTCCATACACGAATGATTGATAACTTGGACGAAGCACTCGTTGAAACATCAGATCTT
TCAATCTTTTGTTTTTACAGTAAAATGCTGGAAGATCAATTTCACATGTGTTTAGAATTT
CCAGCACAAAATCGTTACATTATTGCATTTCCATTGATTTGCAGTCACTTCCAAAATTGC
ACTCATGAAATGTGTCCCGAAGAGAGACATCACATTCTTGAAAGATCAATTTCAGTTGTT
AATATGTTCCTCGATGAAATGGCCAAAGAAGCAAAGAATATTATTACGACAATTTGCGAT
GAACAGTGTATGATGGCTGATGCCTTACTTCCTAAACATTGTGCCAAAATTTTATCAGTA
GCAACACAGCGTAAAAAGAAAGACAAATTGAAGAAACATATGGATGATATAAGACGACCA
GGCGACGAAAGCTATAGAAAGACACGTGAGGATTTAACAACAATGGACAAATTACATATG
GCTTTGACTGAATTGTGTTTTGCAATAAATTATTGCCCTACGGTTAATGTATGGGAATAT
GCATTTGCTCCTCGCGAATATCTTTACCAACATCTGGAAACTCGCTTTTCACGCGCACTC
GTCGGAATGGTCATGTATAATGCTGAAACAATGGAAATTGCAAAGCCATCTGAATTACTT
GCCTCAGTTCGTGCTTATATGAATGTTTTGCAGACAGTTGAGCATTATGTAAACATTGAT
ATGACAAGAATCTTTAACAATTGTTTATTGCAACAGACACAGGCGATCGATAGTCATGGT
GAAAAGACTATTGCCGCACACTATAATACATGGTATTCGGATGTTTTACTGCGAAAAGTG
AGTGGTGGCAATATTGTATTTAGCATGAATCAACGTGCATTTGTCGCAATAACACCAGAA
GGTTGCATTCCTTTCAATCCAGAGGAATTTTCTGATTTCAATGAACTTCGTGCTTTAGCT
GAGATGATAGGACCCTATGGCATTAAGCTAATAAATGAACAATTAATGTGGCATATTGCT
AATCAAGTTCAAGAGTTAAAACGCATGGTGGCGATGAACAAAGAAACACTAATTATCTTA
AGAAGCAATTTCGATAAACCAGATATTATGAAGGAGCATTTCAAAAGATTACAACATGTT
GACAATGTATTACAAAGAATGACGATCATTGGTGTCATTTTGAGTTTCAGACAATTGTTG
CAAGAAGCATTACTTGATGTTCTTGAACAAAGAATTCCATTCCTTGTAAGTTCAGTTAAA
GATTTCCAAAATCATGTGCCTGGCGGTGATCCATTGAAAACCGTCTCGGAAATGGCTTCT
GCTGCAGGTTTAGCATGCAGAGTTGATCCAACTTTATTGAATGCACTCCGAGCACAAAAA
CCTGAAATTGATGAAGGTGAACATTTAATTGTTCTCTTGCTAATGGTATTCGTTGCTGTT
TCTATTCCAAAACTTGCAAAAAATGATCAGTCATTCTATAGAGCATCACTCGAGGCACAT
ACAAACAATACTCATTGTTTAGCACTTGCAGTTAATGATATTTTTGGAGCTCTATTTACA
ATTTGTGGCCAAAATGATATCGAAGATCGAATGGCTGAATTTTTGGCTTTGGCAAGTTCA
TCATTGCTTCGTTTAGGACAAGAAACAGAAAAAGAAGATATTAAAAATCGCGAGTCAATT
TATTTGCTTTTGCACGAAATTGTTCGCGAATCAAATTTCTTGACACAGGATCTTTTGGAA
TCTTGCTTCCCATACGTTCTTATCCGCAATTCGTTCAACAACGTATATAAAAATGAAATG
GCTATATAG
>g6902.t1 Gene=g6902 Length=1122
MARQLNPIQQKISEKLIILNDRGVGILTRIYNIKKACGDAKSKPGFLSDKSLESSIKFII
KKFPNIDTKSLTAITNIKVEVIKSLSLYYYTFVDLLDFKDNVCELLTTMDALQIYLDITV
NHELTKNYLDLVTTYVSLMILLSRVEDRKAVLGLFNAAYELQNNGSDPNFPRLGQMIIDY
DQPTKKLSDEFIPHQRLLTSALKSLVQVYPMRNLTAEKWRELQILTLVGNQAALLKPSKT
DTMSCEYVSLETLDRWIIFGLMLNHQMLGQSNQVASMWIAALESSWVIALFRDEIIYIHQ
YIQNAFEGIKGYSKRISEVKDCYSHAIQKAALMHRERRKFLRTALKELALILTDQPGLLG
PKALYVLIGLCYARDEILWLLRHNENPPISSKAKGKSSEDLVDRQLPELLFHMEELRGLV
RKYTQVIQRYYVQYLSGYDAIELNVKMQNLQVCPEDESIILSSLYQTIAPLTVKQVEMGE
TFDFRAFRLDWFRLQCYMSVAKAGIKITDHVDLARLFDSMIFHTRMIDNLDEALVETSDL
SIFCFYSKMLEDQFHMCLEFPAQNRYIIAFPLICSHFQNCTHEMCPEERHHILERSISVV
NMFLDEMAKEAKNIITTICDEQCMMADALLPKHCAKILSVATQRKKKDKLKKHMDDIRRP
GDESYRKTREDLTTMDKLHMALTELCFAINYCPTVNVWEYAFAPREYLYQHLETRFSRAL
VGMVMYNAETMEIAKPSELLASVRAYMNVLQTVEHYVNIDMTRIFNNCLLQQTQAIDSHG
EKTIAAHYNTWYSDVLLRKVSGGNIVFSMNQRAFVAITPEGCIPFNPEEFSDFNELRALA
EMIGPYGIKLINEQLMWHIANQVQELKRMVAMNKETLIILRSNFDKPDIMKEHFKRLQHV
DNVLQRMTIIGVILSFRQLLQEALLDVLEQRIPFLVSSVKDFQNHVPGGDPLKTVSEMAS
AAGLACRVDPTLLNALRAQKPEIDEGEHLIVLLLMVFVAVSIPKLAKNDQSFYRASLEAH
TNNTHCLALAVNDIFGALFTICGQNDIEDRMAEFLALASSSLLRLGQETEKEDIKNRESI
YLLLHEIVRESNFLTQDLLESCFPYVLIRNSFNNVYKNEMAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6902.t1 | PANTHER | PTHR12093:SF11 | NCK-ASSOCIATED PROTEIN 1 | 4 | 1120 | 0.0 |
| 3 | g6902.t1 | PANTHER | PTHR12093 | NCK-ASSOCIATED PROTEIN 1 | 4 | 1120 | 0.0 |
| 1 | g6902.t1 | Pfam | PF09735 | Membrane-associated apoptosis protein | 9 | 1118 | 0.0 |
| 5 | g6902.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 988 | - |
| 6 | g6902.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 989 | 1006 | - |
| 4 | g6902.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1007 | 1122 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05750 (NCK-associated protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
