General information for g6902.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Membrane-associated protein Hem.
Parent gene
- The parent gene g6902 is located on chr_2: 19775324..19778758 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6902 | g6902.t2 | isoform | g6902.t2 | 19774860 | 19776259 |
| chr_2 | g6902 | g6902.t2 | exon | g6902.t2.exon1 | 19774860 | 19775073 |
| chr_2 | g6902 | g6902.t2 | exon | g6902.t2.exon2 | 19775281 | 19776259 |
| chr_2 | g6902 | g6902.t2 | cds | g6902.t2.CDS1 | 19775324 | 19776259 |
| chr_2 | g6902 | g6902.t2 | TSS | g6902.t2 | NA | NA |
| chr_2 | g6902 | g6902.t2 | TTS | g6902.t2 | NA | NA |
Sequences
>g6902.t2 Gene=g6902 Length=1193
TAAGCCCTTGTAAAAGTTTATTATTTGACGTTAATAACAAAACTCAAACCGCGGCTTATG
AAACAAATTCGAAAGACATACATTTTTATTCAAGATAAAAATTTTTTCTTGTGCAGTAAT
TTAATTTTATTAAGCATAAATATACAAATTTGGATAAATTAAATGATTTAAAACATAATA
TAAGGCATTGTATAATTGAATTTCGCTAGTAAATTTCATTGCACAACTCTCTCGGCAAAA
ACACACATCAATTTAAAATGGCTCGTCAATTAAATCCAATTCAACAAAAGATTTCAGAGA
AATTGATCATTTTAAATGATCGGGGCGTTGGTATTTTGACAAGAATTTACAACATTAAAA
AAGCCTGTGGCGATGCAAAATCTAAACCCGGTTTTCTCTCAGACAAATCACTGGAATCAT
CAATAAAGTTTATTATCAAAAAGTTTCCAAATATTGATACAAAAAGTCTTACAGCAATAA
CAAATATCAAAGTAGAAGTTATCAAATCACTTTCGCTTTATTACTACACATTTGTGGATT
TACTCGATTTTAAAGACAATGTTTGTGAATTATTGACAACAATGGATGCTCTTCAGATTT
ATCTCGATATCACAGTCAATCATGAATTAACGAAAAATTATTTGGATTTGGTTACCACAT
ATGTCTCGCTTATGATCCTTTTGTCACGAGTAGAAGATCGCAAAGCTGTTCTTGGACTCT
TTAATGCAGCTTATGAATTACAAAATAATGGCAGCGATCCAAATTTTCCACGTTTAGGAC
AAATGATTATCGATTATGACCAACCTACAAAGAAATTATCAGACGAATTCATTCCACATC
AACGTCTTCTTACAAGCGCTCTTAAGTCTCTTGTTCAAGTCTATCCAATGCGTAATTTAA
CCGCAGAGAAATGGCGTGAATTGCAAATTCTTACGCTTGTCGGTAATCAAGCCGCTTTAC
TCAAACCTTCAAAAACTGATACAATGTCGTGTGAATATGTTTCGCTAGAAACACTCGATA
GATGGATTATTTTCGGTCTTATGCTGAATCATCAAATGCTGGGTCAATCAAATCAAGTTG
CGAGTATGTGGATTGCTGCTCTCGAATCATCATGGGTTATAGCTCTCTTCAGAGATGAAA
TTATTTATATTCATCAGTACATTCAAAATGCTTTTGAAGGAATAAAAGGATAC
>g6902.t2 Gene=g6902 Length=312
MARQLNPIQQKISEKLIILNDRGVGILTRIYNIKKACGDAKSKPGFLSDKSLESSIKFII
KKFPNIDTKSLTAITNIKVEVIKSLSLYYYTFVDLLDFKDNVCELLTTMDALQIYLDITV
NHELTKNYLDLVTTYVSLMILLSRVEDRKAVLGLFNAAYELQNNGSDPNFPRLGQMIIDY
DQPTKKLSDEFIPHQRLLTSALKSLVQVYPMRNLTAEKWRELQILTLVGNQAALLKPSKT
DTMSCEYVSLETLDRWIIFGLMLNHQMLGQSNQVASMWIAALESSWVIALFRDEIIYIHQ
YIQNAFEGIKGY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6902.t2 | PANTHER | PTHR12093:SF11 | NCK-ASSOCIATED PROTEIN 1 | 4 | 312 | 0 |
| 3 | g6902.t2 | PANTHER | PTHR12093 | NCK-ASSOCIATED PROTEIN 1 | 4 | 312 | 0 |
| 1 | g6902.t2 | Pfam | PF09735 | Membrane-associated apoptosis protein | 9 | 312 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
