Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein 5NUC.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6912 g6912.t4 TSS g6912.t4 19892380 19892380
chr_2 g6912 g6912.t4 isoform g6912.t4 19892550 19896576
chr_2 g6912 g6912.t4 exon g6912.t4.exon1 19892550 19892553
chr_2 g6912 g6912.t4 exon g6912.t4.exon2 19894152 19894492
chr_2 g6912 g6912.t4 cds g6912.t4.CDS1 19894197 19894492
chr_2 g6912 g6912.t4 exon g6912.t4.exon3 19894554 19894635
chr_2 g6912 g6912.t4 cds g6912.t4.CDS2 19894554 19894635
chr_2 g6912 g6912.t4 exon g6912.t4.exon4 19894736 19894989
chr_2 g6912 g6912.t4 cds g6912.t4.CDS3 19894736 19894989
chr_2 g6912 g6912.t4 exon g6912.t4.exon5 19895052 19895179
chr_2 g6912 g6912.t4 cds g6912.t4.CDS4 19895052 19895179
chr_2 g6912 g6912.t4 exon g6912.t4.exon6 19895238 19896576
chr_2 g6912 g6912.t4 cds g6912.t4.CDS5 19895238 19896574
chr_2 g6912 g6912.t4 TTS g6912.t4 NA NA

Sequences

>g6912.t4 Gene=g6912 Length=2148
ACTGAACATAAGAAGAAGAAAAATTCGACGCGAACAGTCGATAGAGAAAATGTTTTTTTC
ACATTTGACGACAATTGTTCTGCTACTGCTAGCTGTACACACCTTCTCAGCACCGCAAAA
GAAATCAACAGATGAGAACTTTAAATTAATTATTTTACACAACAATGATATGCATGCACG
TTTTGAGCAGACAAACGCAGCGAGCGCAAGATGTACAGACGAAGATCGAGAGAAAAACAA
TTGCTATGGAGGTTTTGCGAGAGTTGCGCACGTTGTGAGAGACTATCGAAAGAGAGCAAA
TACTGGCGAGATTCCAAGAGTTCTCTATTTGAATGCTGGTGATACGTATACTGGAACACC
TTGGTTTGCATTATTCAAAGATAATATTACGTCTGCTTTTCTTGAATTACTGAAACCTGA
TGCAATTTCACTCGGCAATCACGAGTTTGATGAAGGGACTGAGAATCTTGCAAAATTTCT
TAAAGAAATTGATTTTCCAGTATTAGCAGCAAACTTAGATTTAGAAAAGGAGCCGTCATT
GAAAGTTGACATTCTGAAACCATCACATATTTTCGAGATCGATGGCATCAAAATTGGTGT
AGTAGGTTACTTGACACCTGAAACTAAAGAAGTTGCAAAGGGCAATCAAGTAGAATTTAT
TGACGAAATTGAAGCTATTAATAAGGAGGCCGCACGTCTGAAAGAAGAAGGTATTAAAAT
TATAATTGCACTTGGTCATTCTGGAATTGAGCGTGATAAGCAAATTGCTATGGAATGTCC
GGACATTGATTTGATTATTGGTGGACATTCTCATACATTTTTATACAATGGAACCAAGCC
CGATATTGATGAACCTTATGATACTTATCCAATAATGATAGTTCAACGTAATGGAAAGAA
AGTGCCTGTTGTTCAAAGTTATGCTTATACAAAATATCTTGGTTACATTCATCTTGAATT
TGATGGTGAAGGAAATATGGTTGAGATTGATGGAAATCCAATTCTTCTTAATCATGACAT
TCCACGTGAACAAGACGTTTTAGATTTACTTCAAAAGTATCGACCAGCAGTATTAGCATT
ACAAACAGAAGTAGTTGGTCAAACTCGAGTCAATTTAGAAGGTTCATGTCGTCGTGTTGA
ATGCAATTTGGGAAATTTCATTGCTGATTCAATGGTAGATTGGAATGCATTGAGATATGA
TGGTATAGGTTGGACAGATGCAGCAATTGGTATCATACAAGGTGGTGGAGTAAGAGCTTC
AATCACAAGAACAGTCAGTGGAAATATCACAATGGAAGATATTGCTACAGTTTTACCATT
TGACAGTAAAGTTGTAGTTATTGAAATCACTGGTGAGACATTGTTAAAGGCTTTTGAACA
TTCAGTTGCACGTTATACAGAAGGTGAAGGGCGTGGAGAATTTTTGCAATATTCTGGAGT
GCAAATTGAATACGATATGAATCGAGAATCAGGCAACCGAGTTGTTAATGTAAAAGTTCT
TTGCGCTTATTGTGAAGTTCCACAACTTGAAGATCTTGTTTTGCATAAAACATATCGCAT
AGTTATGCAAGATTTTCTAGCTAACGGTGGCGATGGGTATGAAATGTTTAAAAATTCACA
AGTTGGAATAGAAACTGAAACAGTTGATGTTGATGTTTTAAAGAGCTATATGCTTAAAAA
ATCACCAATTTATCCAGCTGTTGAATGGAGAATCACAATTAAAGATTTAGTTGATCCAAA
TGATGAGATTGTTGGAAGCAGCCGAGTATTTTTAGATGGAAATTGTTACACAACTGAATG
CAACTTGGGTAACTTTATCACTGATGCATTTGTCGATTGGTATGCAATGAATTCTAATGT
TCAAACGGGTTGGACTGATGCATCGATTGCTCTCATTCCTGCAAGAAATATTCAATTTTC
AATTGATCCAAAAGAAACTAAAGGTGATATTACAAAAGCATTAGCAAACAAAATTCTTCC
ATTAAACAATAAACTTGTTGTTGTTGAAATCTCTGGTGCAGTTTTTATGCAAGCACTTGA
GCATGCTGTCAGCAGTTATTACGATGGTGCTCAAACCGAGTTCTTGCAAATGTCTGGAGT
ACAAGTTGAATATGATATCAATAATGAAGTAGGAAGTCGAGTTGTTTC

>g6912.t4 Gene=g6912 Length=699
MFFSHLTTIVLLLLAVHTFSAPQKKSTDENFKLIILHNNDMHARFEQTNAASARCTDEDR
EKNNCYGGFARVAHVVRDYRKRANTGEIPRVLYLNAGDTYTGTPWFALFKDNITSAFLEL
LKPDAISLGNHEFDEGTENLAKFLKEIDFPVLAANLDLEKEPSLKVDILKPSHIFEIDGI
KIGVVGYLTPETKEVAKGNQVEFIDEIEAINKEAARLKEEGIKIIIALGHSGIERDKQIA
MECPDIDLIIGGHSHTFLYNGTKPDIDEPYDTYPIMIVQRNGKKVPVVQSYAYTKYLGYI
HLEFDGEGNMVEIDGNPILLNHDIPREQDVLDLLQKYRPAVLALQTEVVGQTRVNLEGSC
RRVECNLGNFIADSMVDWNALRYDGIGWTDAAIGIIQGGGVRASITRTVSGNITMEDIAT
VLPFDSKVVVIEITGETLLKAFEHSVARYTEGEGRGEFLQYSGVQIEYDMNRESGNRVVN
VKVLCAYCEVPQLEDLVLHKTYRIVMQDFLANGGDGYEMFKNSQVGIETETVDVDVLKSY
MLKKSPIYPAVEWRITIKDLVDPNDEIVGSSRVFLDGNCYTTECNLGNFITDAFVDWYAM
NSNVQTGWTDASIALIPARNIQFSIDPKETKGDITKALANKILPLNNKLVVVEISGAVFM
QALEHAVSSYYDGAQTEFLQMSGVQVEYDINNEVGSRVV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
28 g6912.t4 CDD cd07409 MPP_CD73_N 33 320 1.04869E-145
22 g6912.t4 Coils Coil Coil 200 220 -
19 g6912.t4 Gene3D G3DSA:3.60.21.10 - 22 351 7.6E-99
21 g6912.t4 Gene3D G3DSA:3.90.780.10 - 352 558 1.5E-70
20 g6912.t4 Gene3D G3DSA:3.90.780.10 - 566 699 5.3E-32
4 g6912.t4 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 22 559 1.8E-224
6 g6912.t4 PANTHER PTHR11575:SF25 5’-NUCLEOTIDASE 22 559 1.8E-224
5 g6912.t4 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 564 699 1.8E-224
7 g6912.t4 PANTHER PTHR11575:SF25 5’-NUCLEOTIDASE 564 699 1.8E-224
12 g6912.t4 PRINTS PR01607 Apyrase family signature 31 49 2.7E-38
13 g6912.t4 PRINTS PR01607 Apyrase family signature 220 237 2.7E-38
9 g6912.t4 PRINTS PR01607 Apyrase family signature 239 262 2.7E-38
11 g6912.t4 PRINTS PR01607 Apyrase family signature 285 305 2.7E-38
10 g6912.t4 PRINTS PR01607 Apyrase family signature 412 435 2.7E-38
8 g6912.t4 PRINTS PR01607 Apyrase family signature 495 514 2.7E-38
3 g6912.t4 Pfam PF00149 Calcineurin-like phosphoesterase 35 256 3.2E-12
2 g6912.t4 Pfam PF02872 5’-nucleotidase, C-terminal domain 348 521 3.3E-41
1 g6912.t4 Pfam PF02872 5’-nucleotidase, C-terminal domain 568 699 1.1E-22
24 g6912.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
25 g6912.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
26 g6912.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 16 -
27 g6912.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 20 -
23 g6912.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 699 -
30 g6912.t4 ProSitePatterns PS00786 5’-nucleotidase signature 2. 123 134 -
16 g6912.t4 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 31 341 2.66E-87
14 g6912.t4 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 347 559 9.94E-56
15 g6912.t4 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 565 699 1.57E-26
18 g6912.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -
29 g6912.t4 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 20 -
17 g6912.t4 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016787 hydrolase activity MF
GO:0000166 nucleotide binding MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values