General information for g6912.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein 5NUC.
Parent gene
- The parent gene g6912 is located on chr_2: 19897594..19902814 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6912 | g6912.t5 | isoform | g6912.t5 | 19894705 | 19897594 |
| chr_2 | g6912 | g6912.t5 | exon | g6912.t5.exon1 | 19894705 | 19894989 |
| chr_2 | g6912 | g6912.t5 | exon | g6912.t5.exon2 | 19895056 | 19895179 |
| chr_2 | g6912 | g6912.t5 | cds | g6912.t5.CDS1 | 19895140 | 19895179 |
| chr_2 | g6912 | g6912.t5 | exon | g6912.t5.exon3 | 19895238 | 19897594 |
| chr_2 | g6912 | g6912.t5 | cds | g6912.t5.CDS2 | 19895238 | 19897594 |
| chr_2 | g6912 | g6912.t5 | TTS | g6912.t5 | 19897725 | 19897725 |
| chr_2 | g6912 | g6912.t5 | TSS | g6912.t5 | NA | NA |
Sequences
>g6912.t5 Gene=g6912 Length=2766
CAGTTATAAAAATATTTTCAATTTTTTTTAGTCACTCGGCAATCACGAGTTTGATGAAGG
GACTGAGAATCTTGCAAAATTTCTTAAAGAAATTGATTTTCCAGTATTAGCAGCAAACTT
AGATTTAGAAAAGGAGCCGTCATTGAAAGTTGACATTCTGAAACCATCACATATTTTCGA
GATCGATGGCATCAAAATTGGTGTAGTAGGTTACTTGACACCTGAAACTAAAGAAGTTGC
AAAGGGCAATCAAGTAGAATTTATTGACGAAATTGAAGCTATTAAGAGGCCGCACGTCTG
AAAGAAGAAGGTATTAAAATTATAATTGCACTTGGTCATTCTGGAATTGAGCGTGATAAG
CAAATTGCTATGGAATGTCCGGACATTGATTTGATTATTGGTGGACATTCTCATACATTT
TTATACAATGGAACCAAGCCCGATATTGATGAACCTTATGATACTTATCCAATAATGATA
GTTCAACGTAATGGAAAGAAAGTGCCTGTTGTTCAAAGTTATGCTTATACAAAATATCTT
GGTTACATTCATCTTGAATTTGATGGTGAAGGAAATATGGTTGAGATTGATGGAAATCCA
ATTCTTCTTAATCATGACATTCCACGTGAACAAGACGTTTTAGATTTACTTCAAAAGTAT
CGACCAGCAGTATTAGCATTACAAACAGAAGTAGTTGGTCAAACTCGAGTCAATTTAGAA
GGTTCATGTCGTCGTGTTGAATGCAATTTGGGAAATTTCATTGCTGATTCAATGGTAGAT
TGGAATGCATTGAGATATGATGGTATAGGTTGGACAGATGCAGCAATTGGTATCATACAA
GGTGGTGGAGTAAGAGCTTCAATCACAAGAACAGTCAGTGGAAATATCACAATGGAAGAT
ATTGCTACAGTTTTACCATTTGACAGTAAAGTTGTAGTTATTGAAATCACTGGTGAGACA
TTGTTAAAGGCTTTTGAACATTCAGTTGCACGTTATACAGAAGGTGAAGGGCGTGGAGAA
TTTTTGCAATATTCTGGAGTGCAAATTGAATACGATATGAATCGAGAATCAGGCAACCGA
GTTGTTAATGTAAAAGTTCTTTGCGCTTATTGTGAAGTTCCACAACTTGAAGATCTTGTT
TTGCATAAAACATATCGCATAGTTATGCAAGATTTTCTAGCTAACGGTGGCGATGGGTAT
GAAATGTTTAAAAATTCACAAGTTGGAATAGAAACTGAAACAGTTGATGTTGATGTTTTA
AAGAGCTATATGCTTAAAAAATCACCAATTTATCCAGCTGTTGAATGGAGAATCACAATT
AAAGATTTAGTTGATCCAAATGATGAGATTGTTGGAAGCAGCCGAGTATTTTTAGATGGA
AATTGTTACACAACTGAATGCAACTTGGGTAACTTTATCACTGATGCATTTGTCGATTGG
TATGCAATGAATTCTAATGTTCAAACGGGTTGGACTGATGCATCGATTGCTCTCATTCCT
GCAAGAAATATTCAATTTTCAATTGATCCAAAAGAAACTAAAGGTGATATTACAAAAGCA
TTAGCAAACAAAATTCTTCCATTAAACAATAAACTTGTTGTTGTTGAAATCTCTGGTGCA
GTTTTTATGCAAGCACTTGAGCATGCTGTCAGCAGTTATTACGATGGTGCTCAAACCGAG
TTCTTGCAAATGTCTGGAGTACAAGTTGAATATGATATCAATAATGAAGTAGGAAGTCGA
GTTGTTTCTGCTAAAATCCTTTGCTCTTCATGTACACTTCCAGAACTTGAAACAATTAAT
ACTTCTGCAAATTATAAAATTTTAATGCCACAAAATCTTGCAAACGGTGATGAAGGTTAC
ACGATGTTCTCAAACCATATCAGCAGTATTTTAGAAGTTACCGAACTTGATGCTTTCTTG
AATTATTTGAAGAAAAAGTCACCGATTTATCCAGCGATTGAATGGCGTATTACAATTAAA
AACTTTGTTGATCCATCTGTGGAAGTTGTTGGTAGCACACGCGTTTTCTTAAATAATGAT
TGTAGTCTTGGTGAATGTAATTTGGGTAACTTCATTACTGATGCAATGGTTGATTGGTAT
TCAAATAAGTACAACAAAGACGAATATTGGACTGATGCATCAATTGCTGTTATTCAAGGC
AGTAGAATCAAAGCGTCAATTGATGCAAAAGCAAATAATGGAAGTATTTTCAAGAGTGAT
GTTGAGAAAATTTTCAGTCCAATTCCATTTACACTTCAGTTAGTAACACTCAAAGGAAGT
GAATTATTAGACATGTTAGAATATTCAATTTCATCATATACTGATGAAGGTATTATTGAC
ACACAATTCTTACAATTATCAGGCATTCAAGTTGTTTATGACACAAGAAAAGCATCTGGA
AGTCGTATTACAGACATTAAAGTTCTTTGCGCTCAATGTAGTGTTCCTGAACTTGTGAAT
GTTGATAGAAATCTTGATTATAAAATAATTATGCAATCCGCAATGTTAACTGAAGACTAT
TATAATGTCATATCAAGTAATAAAATAGAGGAACTTGATGAGAGTGATATGAATGCCTTC
TTAAATTATTTAAAGAAAAAGTCTCCAATTTATCCAGCAGTTGAGTGGAGAATAACGATT
TTAGGTGATGAAGTTACAACTACAACCGAAGCTACAAAAACAACGACAGGAGGCAGTTCA
AATTTGCAGCTTTCACTTGCATTATTGCTTATATCAATATTGATGAGTTTCCTTAACAAG
AGCTAG
>g6912.t5 Gene=g6912 Length=798
MECPDIDLIIGGHSHTFLYNGTKPDIDEPYDTYPIMIVQRNGKKVPVVQSYAYTKYLGYI
HLEFDGEGNMVEIDGNPILLNHDIPREQDVLDLLQKYRPAVLALQTEVVGQTRVNLEGSC
RRVECNLGNFIADSMVDWNALRYDGIGWTDAAIGIIQGGGVRASITRTVSGNITMEDIAT
VLPFDSKVVVIEITGETLLKAFEHSVARYTEGEGRGEFLQYSGVQIEYDMNRESGNRVVN
VKVLCAYCEVPQLEDLVLHKTYRIVMQDFLANGGDGYEMFKNSQVGIETETVDVDVLKSY
MLKKSPIYPAVEWRITIKDLVDPNDEIVGSSRVFLDGNCYTTECNLGNFITDAFVDWYAM
NSNVQTGWTDASIALIPARNIQFSIDPKETKGDITKALANKILPLNNKLVVVEISGAVFM
QALEHAVSSYYDGAQTEFLQMSGVQVEYDINNEVGSRVVSAKILCSSCTLPELETINTSA
NYKILMPQNLANGDEGYTMFSNHISSILEVTELDAFLNYLKKKSPIYPAIEWRITIKNFV
DPSVEVVGSTRVFLNNDCSLGECNLGNFITDAMVDWYSNKYNKDEYWTDASIAVIQGSRI
KASIDAKANNGSIFKSDVEKIFSPIPFTLQLVTLKGSELLDMLEYSISSYTDEGIIDTQF
LQLSGIQVVYDTRKASGSRITDIKVLCAQCSVPELVNVDRNLDYKIIMQSAMLTEDYYNV
ISSNKIEELDESDMNAFLNYLKKKSPIYPAVEWRITILGDEVTTTTEATKTTTGGSSNLQ
LSLALLLISILMSFLNKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g6912.t5 | Gene3D | G3DSA:3.60.21.10 | - | 1 | 105 | 2.4E-25 |
| 18 | g6912.t5 | Gene3D | G3DSA:3.90.780.10 | - | 107 | 318 | 2.0E-70 |
| 20 | g6912.t5 | Gene3D | G3DSA:3.90.780.10 | - | 326 | 537 | 4.0E-52 |
| 19 | g6912.t5 | Gene3D | G3DSA:3.90.780.10 | - | 545 | 758 | 4.9E-44 |
| 5 | g6912.t5 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 2 | 319 | 6.8E-206 |
| 8 | g6912.t5 | PANTHER | PTHR11575:SF25 | 5’-NUCLEOTIDASE | 2 | 319 | 6.8E-206 |
| 6 | g6912.t5 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 324 | 537 | 6.8E-206 |
| 9 | g6912.t5 | PANTHER | PTHR11575:SF25 | 5’-NUCLEOTIDASE | 324 | 537 | 6.8E-206 |
| 4 | g6912.t5 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 543 | 774 | 6.8E-206 |
| 7 | g6912.t5 | PANTHER | PTHR11575:SF25 | 5’-NUCLEOTIDASE | 543 | 774 | 6.8E-206 |
| 12 | g6912.t5 | PRINTS | PR01607 | Apyrase family signature | 45 | 65 | 1.1E-16 |
| 11 | g6912.t5 | PRINTS | PR01607 | Apyrase family signature | 172 | 195 | 1.1E-16 |
| 10 | g6912.t5 | PRINTS | PR01607 | Apyrase family signature | 255 | 274 | 1.1E-16 |
| 2 | g6912.t5 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 108 | 281 | 4.1E-41 |
| 3 | g6912.t5 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 328 | 501 | 1.1E-29 |
| 1 | g6912.t5 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 546 | 710 | 4.4E-22 |
| 22 | g6912.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 778 | - |
| 23 | g6912.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 779 | 796 | - |
| 21 | g6912.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 797 | 798 | - |
| 16 | g6912.t5 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 2 | 101 | 9.28E-21 |
| 14 | g6912.t5 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 107 | 319 | 1.27E-55 |
| 15 | g6912.t5 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 325 | 538 | 1.22E-41 |
| 13 | g6912.t5 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 545 | 759 | 2.22E-35 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
