General information for g6912.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 5’-nucleotidase.
Parent gene
- The parent gene g6912 is located on chr_2: 19897594..19902814 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6912 | g6912.t6 | isoform | g6912.t6 | 19895716 | 19896576 |
| chr_2 | g6912 | g6912.t6 | exon | g6912.t6.exon1 | 19895716 | 19896576 |
| chr_2 | g6912 | g6912.t6 | cds | g6912.t6.CDS1 | 19895720 | 19896574 |
| chr_2 | g6912 | g6912.t6 | TSS | g6912.t6 | NA | NA |
| chr_2 | g6912 | g6912.t6 | TTS | g6912.t6 | NA | NA |
Sequences
>g6912.t6 Gene=g6912 Length=861
CACAATGGAAGATATTGCTACAGTTTTACCATTTGACAGTAAAGTTGTAGTTATTGAAAT
CACTGGTGAGACATTGTTAAAGGCTTTTGAACATTCAGTTGCACGTTATACAGAAGGTGA
AGGGCGTGGAGAATTTTTGCAATATTCTGGAGTGCAAATTGAATACGATATGAATCGAGA
ATCAGGCAACCGAGTTGTTAATGTAAAAGTTCTTTGCGCTTATTGTGAAGTTCCACAACT
TGAAGATCTTGTTTTGCATAAAACATATCGCATAGTTATGCAAGATTTTCTAGCTAACGG
TGGCGATGGGTATGAAATGTTTAAAAATTCACAAGTTGGAATAGAAACTGAAACAGTTGA
TGTTGATGTTTTAAAGAGCTATATGCTTAAAAAATCACCAATTTATCCAGCTGTTGAATG
GAGAATCACAATTAAAGATTTAGTTGATCCAAATGATGAGATTGTTGGAAGCAGCCGAGT
ATTTTTAGATGGAAATTGTTACACAACTGAATGCAACTTGGGTAACTTTATCACTGATGC
ATTTGTCGATTGGTATGCAATGAATTCTAATGTTCAAACGGGTTGGACTGATGCATCGAT
TGCTCTCATTCCTGCAAGAAATATTCAATTTTCAATTGATCCAAAAGAAACTAAAGGTGA
TATTACAAAAGCATTAGCAAACAAAATTCTTCCATTAAACAATAAACTTGTTGTTGTTGA
AATCTCTGGTGCAGTTTTTATGCAAGCACTTGAGCATGCTGTCAGCAGTTATTACGATGG
TGCTCAAACCGAGTTCTTGCAAATGTCTGGAGTACAAGTTGAATATGATATCAATAATGA
AGTAGGAAGTCGAGTTGTTTC
>g6912.t6 Gene=g6912 Length=285
MEDIATVLPFDSKVVVIEITGETLLKAFEHSVARYTEGEGRGEFLQYSGVQIEYDMNRES
GNRVVNVKVLCAYCEVPQLEDLVLHKTYRIVMQDFLANGGDGYEMFKNSQVGIETETVDV
DVLKSYMLKKSPIYPAVEWRITIKDLVDPNDEIVGSSRVFLDGNCYTTECNLGNFITDAF
VDWYAMNSNVQTGWTDASIALIPARNIQFSIDPKETKGDITKALANKILPLNNKLVVVEI
SGAVFMQALEHAVSSYYDGAQTEFLQMSGVQVEYDINNEVGSRVV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g6912.t6 | Gene3D | G3DSA:3.90.780.10 | - | 1 | 144 | 0 |
| 9 | g6912.t6 | Gene3D | G3DSA:3.90.780.10 | - | 152 | 285 | 0 |
| 3 | g6912.t6 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 1 | 145 | 0 |
| 5 | g6912.t6 | PANTHER | PTHR11575:SF25 | 5’-NUCLEOTIDASE | 1 | 145 | 0 |
| 4 | g6912.t6 | PANTHER | PTHR11575 | 5’-NUCLEOTIDASE-RELATED | 150 | 285 | 0 |
| 6 | g6912.t6 | PANTHER | PTHR11575:SF25 | 5’-NUCLEOTIDASE | 150 | 285 | 0 |
| 1 | g6912.t6 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 2 | 107 | 0 |
| 2 | g6912.t6 | Pfam | PF02872 | 5’-nucleotidase, C-terminal domain | 154 | 285 | 0 |
| 7 | g6912.t6 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 1 | 145 | 0 |
| 8 | g6912.t6 | SUPERFAMILY | SSF55816 | 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | 151 | 285 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed