Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein 5NUC.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6912 g6912.t7 isoform g6912.t7 19895716 19902814
chr_2 g6912 g6912.t7 exon g6912.t7.exon1 19895716 19897721
chr_2 g6912 g6912.t7 cds g6912.t7.CDS1 19895720 19897594
chr_2 g6912 g6912.t7 TTS g6912.t7 19897725 19897725
chr_2 g6912 g6912.t7 exon g6912.t7.exon2 19902800 19902814
chr_2 g6912 g6912.t7 TSS g6912.t7 NA NA

Sequences

>g6912.t7 Gene=g6912 Length=2021
CACAATGGAAGATATTGCTACAGTTTTACCATTTGACAGTAAAGTTGTAGTTATTGAAAT
CACTGGTGAGACATTGTTAAAGGCTTTTGAACATTCAGTTGCACGTTATACAGAAGGTGA
AGGGCGTGGAGAATTTTTGCAATATTCTGGAGTGCAAATTGAATACGATATGAATCGAGA
ATCAGGCAACCGAGTTGTTAATGTAAAAGTTCTTTGCGCTTATTGTGAAGTTCCACAACT
TGAAGATCTTGTTTTGCATAAAACATATCGCATAGTTATGCAAGATTTTCTAGCTAACGG
TGGCGATGGGTATGAAATGTTTAAAAATTCACAAGTTGGAATAGAAACTGAAACAGTTGA
TGTTGATGTTTTAAAGAGCTATATGCTTAAAAAATCACCAATTTATCCAGCTGTTGAATG
GAGAATCACAATTAAAGATTTAGTTGATCCAAATGATGAGATTGTTGGAAGCAGCCGAGT
ATTTTTAGATGGAAATTGTTACACAACTGAATGCAACTTGGGTAACTTTATCACTGATGC
ATTTGTCGATTGGTATGCAATGAATTCTAATGTTCAAACGGGTTGGACTGATGCATCGAT
TGCTCTCATTCCTGCAAGAAATATTCAATTTTCAATTGATCCAAAAGAAACTAAAGGTGA
TATTACAAAAGCATTAGCAAACAAAATTCTTCCATTAAACAATAAACTTGTTGTTGTTGA
AATCTCTGGTGCAGTTTTTATGCAAGCACTTGAGCATGCTGTCAGCAGTTATTACGATGG
TGCTCAAACCGAGTTCTTGCAAATGTCTGGAGTACAAGTTGAATATGATATCAATAATGA
AGTAGGAAGTCGAGTTGTTTCTGCTAAAATCCTTTGCTCTTCATGTACACTTCCAGAACT
TGAAACAATTAATACTTCTGCAAATTATAAAATTTTAATGCCACAAAATCTTGCAAACGG
TGATGAAGGTTACACGATGTTCTCAAACCATATCAGCAGTATTTTAGAAGTTACCGAACT
TGATGCTTTCTTGAATTATTTGAAGAAAAAGTCACCGATTTATCCAGCGATTGAATGGCG
TATTACAATTAAAAACTTTGTTGATCCATCTGTGGAAGTTGTTGGTAGCACACGCGTTTT
CTTAAATAATGATTGTAGTCTTGGTGAATGTAATTTGGGTAACTTCATTACTGATGCAAT
GGTTGATTGGTATTCAAATAAGTACAACAAAGACGAATATTGGACTGATGCATCAATTGC
TGTTATTCAAGGCAGTAGAATCAAAGCGTCAATTGATGCAAAAGCAAATAATGGAAGTAT
TTTCAAGAGTGATGTTGAGAAAATTTTCAGTCCAATTCCATTTACACTTCAGTTAGTAAC
ACTCAAAGGAAGTGAATTATTAGACATGTTAGAATATTCAATTTCATCATATACTGATGA
AGGTATTATTGACACACAATTCTTACAATTATCAGGCATTCAAGTTGTTTATGACACAAG
AAAAGCATCTGGAAGTCGTATTACAGACATTAAAGTTCTTTGCGCTCAATGTAGTGTTCC
TGAACTTGTGAATGTTGATAGAAATCTTGATTATAAAATAATTATGCAATCCGCAATGTT
AACTGAAGACTATTATAATGTCATATCAAGTAATAAAATAGAGGAACTTGATGAGAGTGA
TATGAATGCCTTCTTAAATTATTTAAAGAAAAAGTCTCCAATTTATCCAGCAGTTGAGTG
GAGAATAACGATTTTAGGTGATGAAGTTACAACTACAACCGAAGCTACAAAAACAACGAC
AGGAGGCAGTTCAAATTTGCAGCTTTCACTTGCATTATTGCTTATATCAATATTGATGAG
TTTCCTTAACAAGAGCTAGTTATAAAATGAAAGTTTAACATAAAAAAGTTCCTGATACTA
ACATAAAACAATGTAATTGCGTGAGAAAAATTTAAAGAAATTTAGAACAAATGTAAAATA
AAATAAAGAGATAAAAGAATGATTACCAAAGAAAAAAATCT

>g6912.t7 Gene=g6912 Length=624
MEDIATVLPFDSKVVVIEITGETLLKAFEHSVARYTEGEGRGEFLQYSGVQIEYDMNRES
GNRVVNVKVLCAYCEVPQLEDLVLHKTYRIVMQDFLANGGDGYEMFKNSQVGIETETVDV
DVLKSYMLKKSPIYPAVEWRITIKDLVDPNDEIVGSSRVFLDGNCYTTECNLGNFITDAF
VDWYAMNSNVQTGWTDASIALIPARNIQFSIDPKETKGDITKALANKILPLNNKLVVVEI
SGAVFMQALEHAVSSYYDGAQTEFLQMSGVQVEYDINNEVGSRVVSAKILCSSCTLPELE
TINTSANYKILMPQNLANGDEGYTMFSNHISSILEVTELDAFLNYLKKKSPIYPAIEWRI
TIKNFVDPSVEVVGSTRVFLNNDCSLGECNLGNFITDAMVDWYSNKYNKDEYWTDASIAV
IQGSRIKASIDAKANNGSIFKSDVEKIFSPIPFTLQLVTLKGSELLDMLEYSISSYTDEG
IIDTQFLQLSGIQVVYDTRKASGSRITDIKVLCAQCSVPELVNVDRNLDYKIIMQSAMLT
EDYYNVISSNKIEELDESDMNAFLNYLKKKSPIYPAVEWRITILGDEVTTTTEATKTTTG
GSSNLQLSLALLLISILMSFLNKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6912.t7 Gene3D G3DSA:3.90.780.10 - 1 144 1.3E-45
13 g6912.t7 Gene3D G3DSA:3.90.780.10 - 152 363 2.5E-52
14 g6912.t7 Gene3D G3DSA:3.90.780.10 - 371 584 3.0E-44
4 g6912.t7 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 1 145 2.6E-140
7 g6912.t7 PANTHER PTHR11575:SF25 5’-NUCLEOTIDASE 1 145 2.6E-140
5 g6912.t7 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 150 363 2.6E-140
8 g6912.t7 PANTHER PTHR11575:SF25 5’-NUCLEOTIDASE 150 363 2.6E-140
6 g6912.t7 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 369 600 2.6E-140
9 g6912.t7 PANTHER PTHR11575:SF25 5’-NUCLEOTIDASE 369 600 2.6E-140
1 g6912.t7 Pfam PF02872 5’-nucleotidase, C-terminal domain 2 107 1.2E-25
2 g6912.t7 Pfam PF02872 5’-nucleotidase, C-terminal domain 154 327 7.2E-30
3 g6912.t7 Pfam PF02872 5’-nucleotidase, C-terminal domain 372 536 2.9E-22
17 g6912.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 604 -
18 g6912.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 605 622 -
16 g6912.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 623 624 -
11 g6912.t7 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 1 145 1.57E-37
12 g6912.t7 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 151 364 7.59E-42
10 g6912.t7 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 371 585 1.31E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values